Factsheet for TraesCS3D01G297400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G304500.1	Wheat	cytosol, peroxisome, plasma membrane	97.77	97.94
TraesCS3B01G332000.1	Wheat	plasma membrane	97.6	97.27
HORVU3Hr1G073520.3	Barley	cytosol	70.21	92.34
EES03649	Sorghum	cytosol, peroxisome, plasma membrane	73.29	74.31
Os01t0761400-01	Rice	plasma membrane	71.4	72.65
Zm00001d043375_P001	Maize	plasma membrane	70.72	64.63
TraesCS3D01G297600.1	Wheat	plasma membrane	39.9	39.63
TraesCS4D01G026800.1	Wheat	golgi, unclear	36.3	35.57
TraesCS1D01G257200.1	Wheat	cytosol, nucleus, plasma membrane	35.79	35.19
TraesCS1D01G257100.1	Wheat	plasma membrane	36.3	35.16
TraesCS5D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	36.64	35.02
TraesCS2D01G044200.1	Wheat	plasma membrane	35.62	34.72
TraesCS5D01G045300.1	Wheat	cytosol, peroxisome, plasma membrane	36.3	34.53
TraesCS7D01G209200.1	Wheat	cytosol, nucleus, peroxisome	36.47	34.47
TraesCS1D01G256700.1	Wheat	plasma membrane	35.79	34.38
TraesCS2D01G044000.1	Wheat	plasma membrane	34.93	33.89
TraesCS7D01G049300.1	Wheat	plasma membrane	29.79	31.58
TraesCS3D01G414400.1	Wheat	plasma membrane	31.51	30.51
TraesCS3D01G414300.1	Wheat	plasma membrane	31.51	30.31
TraesCS7D01G120200.1	Wheat	cytosol, plasma membrane, vacuole	29.45	30.28
TraesCS5D01G158500.1	Wheat	plasma membrane	29.62	30.24
TraesCS7D01G119800.1	Wheat	plasma membrane	28.42	29.86
TraesCS7D01G049400.1	Wheat	plasma membrane	28.08	29.29
TraesCS7D01G119900.1	Wheat	plasma membrane	27.91	28.7

Protein Annotations

EnsemblPlants:TraesCS3D01G297400.1	EnsemblPlantsGene:TraesCS3D01G297400	Gene3D:1.20.1250.20	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF111	PFAM:PF00854
SEG:seg	SUPFAM:SSF103473	TIGR:cd06174	TMHMM:TMhelix	MapMan:24.2.2.9	:

Description

No Description!

Coordinates

chr3D:-:410991267..410993437

Molecular Weight (calculated)

63170.0 Da

IEP (calculated)

9.084

GRAVY (calculated)

0.202

Length

584 amino acids

Sequence
(BLAST)

001: METQEGDAHR SESDAHKVKG RGGFVALPFI IANEMLEKVA GFGLNTNMIM YLTKQYHLSN VTAGATLFVW AAAANFAPIP GALIADMYTG RFMAISLGSI
101: ACLTGVVFLW LSAMIPGARP PPCGVGLAGE QCAPPGPRHL AWLIAGFTFL SIGAGGIRPC SMAFGADQFS RHPKERRSRI LQAYFNAYYA SIGVAFTVAV
201: TVIVYVQDNV GWKAGFAVPM GLMMLSAVSF LLGSRLYVKE KGSKQMFAGI GAALVAAIRN YRVQLPAKTE DGVYHHLKDC KLTVPTDRLR FLNKACIISN
301: NGGVDLPGTG AAASERDGNV GGRRLCTVDQ VEQLKSAVRI LPIWSSTVFL AQAMSQNYAV LQANEMDRRI GVGQFRVPGC SLTMFNMVTM SLWSGSYDRW
401: IAPALRRVTG DPRGLTMKQR VGVGLLLATA AMAVSGAVEG ARRRLELAGG GGAGMSAFWL VPQFALMGLA EAFGVIGELE FFYTELPKSM ASFSMALLYM
501: AMGVGNLVNS LIVKVVDDAS RRGGRTSWLS SDLNAGHYDY YYWLLAGLGA VNFVYFLWCA WKYGEEGKNV EWEEGEGERE RPMA

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.