Factsheet for TraesCS3D01G297600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G332100.1	Wheat	plasma membrane	97.28	97.28
TraesCS3A01G304400.1	Wheat	plasma membrane	96.77	96.77
HORVU3Hr1G073580.1	Barley	plasma membrane	86.56	81.18
EES03650	Sorghum	plasma membrane	71.94	72.68
Os01t0761500-01	Rice	plasma membrane	70.92	70.68
Zm00001d043374_P001	Maize	plasma membrane	70.24	69.65
GSMUA_Achr9P06310_001	Banana	plasma membrane	52.21	52.57
Solyc12g007220.1.1	Tomato	cytosol, peroxisome, plasma membrane	48.47	48.63
KRH60261	Soybean	plasma membrane	46.94	48.17
PGSC0003DMT400000812	Potato	plasma membrane, plastid	44.39	46.11
KRH41549	Soybean	plasma membrane	44.05	44.73
TraesCS3D01G297400.1	Wheat	plasma membrane	39.63	39.9
TraesCS1D01G257200.1	Wheat	cytosol, nucleus, plasma membrane	34.35	34.01
TraesCS7D01G209200.1	Wheat	cytosol, nucleus, peroxisome	35.71	33.98
TraesCS4D01G026800.1	Wheat	golgi, unclear	34.18	33.72
TraesCS2D01G044200.1	Wheat	plasma membrane	34.35	33.72
TraesCS3D01G414400.1	Wheat	plasma membrane	34.35	33.5
TraesCS5D01G045300.1	Wheat	cytosol, peroxisome, plasma membrane	34.86	33.39
TraesCS5D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	34.52	33.22
TraesCS1D01G256700.1	Wheat	plasma membrane	34.35	33.22
TraesCS1D01G257100.1	Wheat	plasma membrane	33.67	32.84
TraesCS2D01G044000.1	Wheat	plasma membrane	33.33	32.56
TraesCS7D01G119800.1	Wheat	plasma membrane	29.76	31.47
TraesCS3D01G414300.1	Wheat	plasma membrane	32.48	31.47
TraesCS7D01G120200.1	Wheat	cytosol, plasma membrane, vacuole	30.27	31.34
TraesCS7D01G119900.1	Wheat	plasma membrane	29.59	30.63
TraesCS7D01G049400.1	Wheat	plasma membrane	28.74	30.18
TraesCS7D01G049300.1	Wheat	plasma membrane	28.23	30.13
TraesCS5D01G158500.1	Wheat	plasma membrane	28.4	29.2

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF58
SUPFAM:SSF103473	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G297600	EnsemblPlants:TraesCS3D01G297600.1	TIGR:cd06174	SEG:seg

Description

No Description!

Coordinates

chr3D:-:411003008..411004965

Molecular Weight (calculated)

63939.8 Da

IEP (calculated)

8.831

GRAVY (calculated)

0.395

Length

588 amino acids

Sequence
(BLAST)

001: MEVSAMEEAA VPVPVPAARR KGGLRTIPFI ISNEIFEKVA TYGLQANMVV YLTKRYDMTP ATSAMVLYLW SALTNFLPIG GGVLSDVFFG RFPVIAVGCV
101: VSLSGMCLLL VTAILPVYKK TPGCDPANPS ACTMLTCQLP LLFTSFLLMS LGAGGIRPCA LAFGADQLDK RDNSTKNVRR LQTFFNWYYT VLGISLVVAV
201: LVIVYIQDHM GWVVGFSVPV VLMLAALMLF LAGSPLYLKA EADRSVLVGI VQVLVASYKN RREVLPPETA EASCFHNKAG SRPRVPTKKM VSMNRACVLR
301: NPSKELHSDG SACDPWRLCT VQQVEDAKAV IRVLPIWSTG IIPGVIVAQV MFPVLQAGTM DRQMGKVEVP AASYSVFGII TLTVWVALYD RVLVRPLSRL
401: TGHARGLSLR QRMGAGLAVF VVAMAVAART EALRRGAAIA EGFQDQKHAV GHMSAMRLVP QHCLIGLADA LNLIGQIEFY YSEFPKSMSS IGVSLLALGI
501: GFGAVLGSAI VGIMNSATGR DGRDSWLSSN LNRGRYDYYY LVLAALSVAN LVYFVWCSWA YGEEGQIRVM ALAAEEAEEE ETKQEQHK

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.