Factsheet for Solyc12g007220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000812	Potato	plasma membrane, plastid	85.84	88.87
KRH60261	Soybean	plasma membrane	54.1	55.32
GSMUA_Achr9P06310_001	Banana	plasma membrane	54.78	54.97
KRH41549	Soybean	plasma membrane	52.39	53.02
Os01t0761500-01	Rice	plasma membrane	50.85	50.51
EES03650	Sorghum	plasma membrane	49.32	49.66
Zm00001d043374_P001	Maize	plasma membrane	50.17	49.58
TraesCS3A01G304400.1	Wheat	plasma membrane	49.49	49.32
TraesCS3B01G332100.1	Wheat	plasma membrane	48.81	48.64
TraesCS3D01G297600.1	Wheat	plasma membrane	48.63	48.47
Solyc05g005980.2.1	Tomato	plasma membrane	46.08	46.63
Solyc12g044310.1.1	Tomato	plasma membrane	49.83	46.42
HORVU3Hr1G073580.1	Barley	plasma membrane	49.49	46.25
Solyc03g120560.2.1	Tomato	plasma membrane	46.93	45.61
Solyc05g005970.2.1	Tomato	plasma membrane	44.88	45.34
Solyc05g005920.2.1	Tomato	plasma membrane	44.88	45.11
Solyc04g005070.2.1	Tomato	plasma membrane	44.03	45.03
Solyc08g066940.2.1	Tomato	plasma membrane	39.25	44.83
Solyc05g005940.2.1	Tomato	plasma membrane	43.86	44.39
Solyc03g120550.2.1	Tomato	plasma membrane	47.61	43.59
Solyc05g005950.2.1	Tomato	plasma membrane	42.49	43.23
Solyc05g006000.2.1	Tomato	plasma membrane	43.17	43.17
Solyc05g006010.2.1	Tomato	plasma membrane	42.66	42.73
Solyc05g005990.2.1	Tomato	plasma membrane	33.45	42.7
Solyc05g005960.2.1	Tomato	plasma membrane	41.47	42.19
Solyc12g095810.1.1	Tomato	plasma membrane	45.05	40.18
Solyc05g009500.2.1	Tomato	plasma membrane	37.03	37.87
Solyc03g113420.2.1	Tomato	plasma membrane	37.03	36.97
Solyc03g113430.2.1	Tomato	plasma membrane	36.69	36.75
Solyc06g071570.2.1	Tomato	plasma membrane	35.32	35.81
Solyc05g005910.2.1	Tomato	plasma membrane	45.9	35.63
Solyc11g072570.1.1	Tomato	plasma membrane	33.45	35.06
Solyc06g075490.1.1	Tomato	plasma membrane	32.76	34.97
Solyc06g005070.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	18.6	34.6
Solyc11g072560.1.1	Tomato	plasma membrane	30.2	34.44
Solyc06g075450.1.1	Tomato	extracellular, plasma membrane, vacuole	31.57	33.88
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	34.98	33.77
Solyc06g075500.2.1	Tomato	plasma membrane	31.23	33.7
Solyc11g072580.1.1	Tomato	plasma membrane	30.89	32.97
Solyc06g075440.1.1	Tomato	plasma membrane	29.86	32.96
Solyc06g075480.2.1	Tomato	plasma membrane	31.06	32.85
Solyc03g113440.2.1	Tomato	plasma membrane	31.57	31.04
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	15.87	30.69

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:IPR020846	UniProt:K4DBQ9	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam
ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF58	InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	EnsemblPlantsGene:Solyc12g007220.1
EnsemblPlants:Solyc12g007220.1.1	TMHMM:TMhelix	UniParc:UPI00027693F0	:	:	:

Description

No Description!

Coordinates

chr12:-:1636828..1640811

Molecular Weight (calculated)

65618.0 Da

IEP (calculated)

9.074

GRAVY (calculated)

0.257

Length

586 amino acids

Sequence
(BLAST)

001: MEKKIKENNS EIVKTNFEDV SSDKKLGGLR TMPFIIANEA LEKVASVGLI SNMILYLKNE YHITNASGAT ILFWWNAMSN FTPIFGAFLA DSYLGRFYVI
101: ALGTFITLIG MVVLWLTATL KEARPHGCKL ELGNCLQPTI AQYAFLFSSF VLMSIGAGGI RPCSLAFGAD QFDNPKNPNN GRILQSFFNW YYAAVGISVL
201: ISVTIIVYIQ TQFGWVVGFG VPAGLMFLAT IFFLLGSTIF IKLKANKSLF TNFVQVIVVS WKNKHLALPP MSSNEWYHHD EKGSRTIFPS NKLRFLNKAC
301: IIRNPNNETS TTNPWNLCTI QQVEEFKALL KVLPIWSTGI MIAVTLSQHA FPVLQANTMD RHVSKGSNFQ IPASSYSAFG ILTLTTWLVF YDRVLVPWIS
401: RFTRKPRGLS FKQRMGIGLL LSCAAQVVAA LVERERRSRA LDQGLANHPV SQVDMSAMWL VPQHCLTGLA EAFNAIGQIE FYYSQFPKSM ASVGVALFSL
501: GMGFGNLVGS LIVEIVDHVT SRGGKVSWVS NNLNLGHYDY YYWVLCLLSV GNFFYFIVCA WAYGSDEDKR IWEEDQVEKK GEIVML

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.