Factsheet for Solyc04g005070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004850	Potato	plasma membrane	93.89	93.89
Solyc05g005990.2.1	Tomato	plasma membrane	59.86	74.73
Solyc05g006000.2.1	Tomato	plasma membrane	76.27	74.57
Solyc05g006010.2.1	Tomato	plasma membrane	75.92	74.36
Solyc05g005980.2.1	Tomato	plasma membrane	61.43	60.79
Solyc05g005920.2.1	Tomato	plasma membrane	61.43	60.38
Solyc05g005970.2.1	Tomato	plasma membrane	60.03	59.31
Solyc05g005940.2.1	Tomato	plasma membrane	58.64	58.03
Solyc05g005960.2.1	Tomato	plasma membrane	58.12	57.81
Solyc05g005950.2.1	Tomato	plasma membrane	57.77	57.47
Solyc08g066940.2.1	Tomato	plasma membrane	47.47	53.02
VIT_11s0016g03600.t01	Wine grape	plasma membrane	53.05	52.14
KRH04819	Soybean	plasma membrane	52.18	51.82
KRH16178	Soybean	plasma membrane	49.91	48.89
Solyc05g005910.2.1	Tomato	plasma membrane	61.78	46.89
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	43.11	44.91
Solyc12g007220.1.1	Tomato	cytosol, peroxisome, plasma membrane	45.03	44.03
Solyc03g120560.2.1	Tomato	plasma membrane	43.98	41.79
Solyc12g044310.1.1	Tomato	plasma membrane	44.33	40.38
Solyc05g009500.2.1	Tomato	plasma membrane	38.74	38.74
Solyc03g120550.2.1	Tomato	plasma membrane	42.76	38.28
Solyc12g095810.1.1	Tomato	plasma membrane	41.01	35.77
Solyc03g113420.2.1	Tomato	plasma membrane	35.78	34.92
Solyc03g113430.2.1	Tomato	plasma membrane	35.25	34.53
Solyc06g071570.2.1	Tomato	plasma membrane	34.73	34.43
Solyc06g075500.2.1	Tomato	plasma membrane	32.46	34.25
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	35.43	33.44
Solyc06g075480.2.1	Tomato	plasma membrane	31.24	32.31
Solyc06g075450.1.1	Tomato	extracellular, plasma membrane, vacuole	30.72	32.23
Solyc06g075440.1.1	Tomato	plasma membrane	29.67	32.02
Solyc06g075490.1.1	Tomato	plasma membrane	30.37	31.69
Solyc11g072560.1.1	Tomato	plasma membrane	28.1	31.32
Solyc03g113440.2.1	Tomato	plasma membrane	32.11	30.87
Solyc11g072570.1.1	Tomato	plasma membrane	30.02	30.77
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	16.06	30.36
Solyc11g072580.1.1	Tomato	plasma membrane	28.8	30.05
Solyc06g005070.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	16.06	29.21
VIT_04s0008g03580.t01	Wine grape	plasma membrane	51.66	25.06

Protein Annotations

EnsemblPlants:Solyc04g005070.2.1	EnsemblPlantsGene:Solyc04g005070.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	PFAM:PF00854
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002765FCC	UniProt:K4BNB3	MapMan:24.2.2.9	:

Description

No Description!

Coordinates

chr4:-:59436..62839

Molecular Weight (calculated)

63850.0 Da

IEP (calculated)

6.185

GRAVY (calculated)

0.386

Length

573 amino acids

Sequence
(BLAST)

001: MGNKQEQEEL LLNHSKNSRK GGLITMPFII VNESCEKLAS YGLLPNMIIY LTTFYHMEAA SASVLIALWT ALSNGLGLFG AFLSDSYLGR FRAVAIGTIS
101: SLIGTCILWL TTIMPQLRPL PCGQHQHVCD GTTAAQLAIL LCSLGLMSIG TGFNRPCSIA FGADQLENKE NPDNERLIDS YFNWYYASVG VSLVLAVTVI
201: VYIQDHFGWQ IGFGVPALLM LISVSIFLIG SPLYIKAKAR GSLFTGLFQV AVAAFRKRHI NVESNYIADC YYKEPESNLL EPSADFRCLN RACIIEDPRM
301: ELKPDGEVSD PWNLCCVEQV ELMKCFLRVL PMWSTCLILL VAVGQTFSIF QMMTMDRHIF SLFEIPAGSF GIISLIAWTL WVALYDRALV PLLSRYTGHP
401: TGLSPVSRMG ISLILGCMAT ALQAITETIR RNKAINAGFE DDPNAVLNMS WMWLVPQFAL YGVAEAFNVV GQIEFIYSLF PKSMSSFASA MYTFGLAIAS
501: LISSFLVSMV DKVTSSGGNT SWLASNINRG HLDYFYWLLT FLSFINLLYF MAIYRFTEHH HDGRSSLYHE AEE

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.