Factsheet for PGSC0003DMT400004850

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005070.2.1	Tomato	plasma membrane	93.89	93.89
PGSC0003DMT400040231	Potato	plasma membrane	76.96	75.26
PGSC0003DMT400040284	Potato	plasma membrane	76.09	74.53
PGSC0003DMT400040285	Potato	plasma membrane	75.57	74.02
PGSC0003DMT400010578	Potato	plasma membrane	49.21	64.38
PGSC0003DMT400010582	Potato	plasma membrane	59.86	62.14
PGSC0003DMT400040282	Potato	plasma membrane	62.13	61.49
PGSC0003DMT400040275	Potato	plasma membrane	59.69	57.38
PGSC0003DMT400074797	Potato	plasma membrane	51.31	55.47
VIT_11s0016g03600.t01	Wine grape	plasma membrane	52.88	51.97
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	35.95	51.63
KRH04819	Soybean	plasma membrane	51.66	51.3
KRH16178	Soybean	plasma membrane	50.61	49.57
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	43.11	44.91
PGSC0003DMT400000812	Potato	plasma membrane, plastid	43.11	43.64
PGSC0003DMT400068025	Potato	plasma membrane	43.98	42.07
PGSC0003DMT400006545	Potato	plasma membrane	34.03	41.76
PGSC0003DMT400075590	Potato	plasma membrane	41.71	41.49
PGSC0003DMT400037693	Potato	plasma membrane	39.44	38.97
PGSC0003DMT400065197	Potato	mitochondrion	36.47	35.73
PGSC0003DMT400065196	Potato	plasma membrane	36.47	35.36
PGSC0003DMT400019426	Potato	plasma membrane	33.86	35.08
PGSC0003DMT400016889	Potato	plasma membrane	33.51	34.78
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	36.13	34.16
PGSC0003DMT400019424	Potato	mitochondrion	19.9	33.93
PGSC0003DMT400069660	Potato	plasma membrane	34.21	33.91
PGSC0003DMT400019420	Potato	plasma membrane	31.76	33.33
PGSC0003DMT400065303	Potato	plasma membrane	30.54	33.27
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	11.87	32.69
PGSC0003DMT400019419	Potato	plasma membrane	28.8	32.61
PGSC0003DMT400065310	Potato	plasma membrane	30.37	31.35
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	32.46	31.26
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	11.34	31.1
PGSC0003DMT400065326	Potato	plasma membrane	33.16	31.1
VIT_04s0008g03580.t01	Wine grape	plasma membrane	51.83	25.15
PGSC0003DMT400016891	Potato	plasma membrane	17.63	21.17

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:102594079	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:IPR020846	UniProt:M0ZP29	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG402001926
PGSC:PGSC0003DMG402001926	EnsemblPlants:PGSC0003DMT400004850	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473
TMHMM:TMhelix	UniParc:UPI0002957A2C	RefSeq:XP_006363540.1	:	:	:

Description

LATD/NIP [Source:PGSC_GENE;Acc:PGSC0003DMG402001926]

Coordinates

chr00:-:12386709..12391564

Molecular Weight (calculated)

63877.8 Da

IEP (calculated)

6.226

GRAVY (calculated)

0.373

Length

573 amino acids

Sequence
(BLAST)

001: MGNKSEQEEL LLNHSKNSRK GGLITMPFII VNESCEKLAS YGLLPNMIIY LTTFYHMEAA SASVLLALWT ALSNGLGLFG AFLSDSYLGR FRAVAIGTIS
101: SLIGMCILWL TTIIPQLRPL PCGQHQHGCD GTTAVQLAIL LCSFGLISIG TGFNRPCSIA FGADQLENKE NPDNERLIDS YFNWYYASVG ISLVLAVTVI
201: VYIQDHFGWQ IGFAVPALLM IISVSIFLIG SPLYIKAKAR GSLFTGLFQV AVAASRKRHI NVQLNNNDDC YYREPESNHL EPSADFRCLN RACIIEDPHM
301: ELKPDGKVSD PWNLCSVEQV ELLKCFLRVL PMWSTCLVLL VAIGQTFSIF QMMTMDRHVF SLFEIPAGSF GIITLIAWTI WVALYDRILV PLLSRYTGHP
401: TGLSPVSRMG ISLILGCMAT ALQAITETIR RNKAIEAGFE DDPNAVLNMS WMWLVPQFAL YGVAEAFNVV GQIEFIYSLF PKSMSSFASA MYTFGLAIAS
501: LISSFLVSMV DNVTSAGGNT SWLASNINRG HLDYFYWLLT FLSFINLLYF MVVYRFTEHH HDGRNSLYHE AEE

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.