Factsheet for VIT_11s0016g03600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010578	Potato	plasma membrane	40.82	54.34
PGSC0003DMT400074797	Potato	plasma membrane	48.71	53.58
Solyc04g005070.2.1	Tomato	plasma membrane	52.14	53.05
PGSC0003DMT400004850	Potato	plasma membrane	51.97	52.88
Solyc05g005970.2.1	Tomato	plasma membrane	52.49	52.76
PGSC0003DMT400040282	Potato	plasma membrane	52.32	52.68
Solyc05g005980.2.1	Tomato	plasma membrane	51.8	52.16
Solyc05g005990.2.1	Tomato	plasma membrane	40.82	51.85
KRH04819	Soybean	plasma membrane	50.94	51.47
Solyc05g005920.2.1	Tomato	plasma membrane	51.46	51.46
PGSC0003DMT400040284	Potato	plasma membrane	51.63	51.45
PGSC0003DMT400040285	Potato	plasma membrane	51.29	51.11
Solyc08g066940.2.1	Tomato	plasma membrane	44.94	51.07
PGSC0003DMT400010582	Potato	plasma membrane	48.2	50.91
PGSC0003DMT400040231	Potato	plasma membrane	50.09	49.83
Solyc05g006000.2.1	Tomato	plasma membrane	50.09	49.83
VIT_09s0002g04130.t01	Wine grape	plasma membrane	52.83	49.52
Solyc05g006010.2.1	Tomato	plasma membrane	49.4	49.23
Solyc05g005940.2.1	Tomato	plasma membrane	48.2	48.53
Solyc05g005950.2.1	Tomato	plasma membrane	47.86	48.44
KRH16178	Soybean	plasma membrane	47.68	47.52
Solyc05g005960.2.1	Tomato	plasma membrane	46.66	47.22
PGSC0003DMT400040275	Potato	plasma membrane	48.03	46.98
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	31.39	45.86
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	40.48	42.91
Solyc05g005910.2.1	Tomato	plasma membrane	52.14	40.26
VIT_01s0011g03400.t01	Wine grape	plasma membrane	37.56	37.56
VIT_01s0026g01490.t01	Wine grape	plastid	39.11	36.83
VIT_14s0066g02590.t01	Wine grape	plasma membrane	36.19	36.07
VIT_08s0040g00830.t01	Wine grape	peroxisome	36.02	35.06
VIT_06s0004g03520.t01	Wine grape	plasma membrane	31.05	31.37
VIT_06s0004g03530.t01	Wine grape	plasma membrane	30.53	30.85
VIT_04s0008g03580.t01	Wine grape	plasma membrane	58.83	29.04
VIT_17s0000g05550.t01	Wine grape	plasma membrane	35.33	12.02

Protein Annotations

MapMan:24.2.2.9	ProteinID:CCB51507	ProteinID:CCB51507.1	UniProt:F6HH11	EMBL:FN595756	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI00015C920B
ArrayExpress:VIT_11s0016g03600	EnsemblPlantsGene:VIT_11s0016g03600	EnsemblPlants:VIT_11s0016g03600.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:2943205..2945209

Molecular Weight (calculated)

64799.4 Da

IEP (calculated)

8.360

GRAVY (calculated)

0.330

Length

583 amino acids

Sequence
(BLAST)

001: MRDDPPEESA RELVFESRKG GFRTIPFIIV NESFEKVASY GLLPNMIFYM LNDYHMEVAN ATTILFLWSA LSNGLALVGA FLSDSYLGRF RVIALGSFSS
101: LLGMTLLWLT AMNPQLKPPP CSPLSSSCHS ATLAQLIFFL SSLVFISIGA GCIRPCSMAF GADQLDNKKN SNNERLQQSF INWYYASIGV SAILALTVII
201: YIQDQYGWRV GFGVPAILML LSLVMFLLGS SLYIKVNTEK SFFTGFFQVP VAAFRNRNIA LPDQDSAYNR SHNSFLTAPT MKLRYLNKAC IIRDPQQYLN
301: PHGYASNPWK LCTIDQVEFL KAVLRVIPIC SSGIMILLSM FQQSFSIIQA NSMDRHLFPS IQIPAGSFTV FTIITMTVYV VIYDRVLTPI LVKYTGNPRG
401: LSTKLRMGLG LLLSLVGTVL CAIVESIRRR TAINEGLADK PDAVTSMSAM WLIPQYSLFG LAEAMNAVGQ IEFYYSQFPK SMYSMGMALH TLSTALSSLV
501: GAALVRIVDG VTGKGGNVSW LSSNINKGHL DYYYWLLTVM GVVNLVYYFL CCWAYGPMDG EPLVRDEMVE SEERPQSRAT PLA

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.