Factsheet for VIT_09s0002g04130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69519	Canola	plasma membrane	29.9	63.7
CDY70561	Canola	plasma membrane	55.47	63.42
CDY69522	Canola	plasma membrane	29.58	63.01
PGSC0003DMT400006545	Potato	plasma membrane	47.27	62.95
Bra018952.1-P	Field mustard	plasma membrane	61.25	62.87
AT1G52190.1	Thale cress	cytosol, peroxisome, plasma membrane	61.25	62.77
CDX97728	Canola	plasma membrane	59.81	62.73
CDY30141	Canola	plasma membrane	59.81	62.73
Bra033884.1-P	Field mustard	plasma membrane	24.92	62.25
Bra027185.1-P	Field mustard	plasma membrane	59.16	62.06
CDY28371	Canola	plasma membrane	48.23	61.73
CDY51257	Canola	plastid	48.07	61.52
AT3G16180.1	Thale cress	plasma membrane	58.36	61.42
PGSC0003DMT400068025	Potato	plasma membrane	59.0	61.27
KRH44330	Soybean	plasma membrane	57.4	60.82
KRH47260	Soybean	plasma membrane	59.0	60.56
CDY20187	Canola	plasma membrane	28.62	60.54
KRH09892	Soybean	cytosol, peroxisome, plasma membrane	58.2	60.23
Solyc12g044310.1.1	Tomato	plasma membrane	60.61	59.94
KRH44331	Soybean	cytosol, peroxisome, plasma membrane	57.88	59.31
KRH09893	Soybean	cytosol, peroxisome, plasma membrane	58.2	58.77
KRH47259	Soybean	plasma membrane	57.72	58.76
Solyc03g120560.2.1	Tomato	plasma membrane	55.47	57.21
Solyc03g120550.2.1	Tomato	plasma membrane	57.72	56.09
VIT_11s0016g03600.t01	Wine grape	plasma membrane	49.52	52.83
Bra021168.1-P	Field mustard	plasma membrane	59.97	42.82
VIT_14s0066g02590.t01	Wine grape	plasma membrane	37.62	40.0
VIT_01s0026g01490.t01	Wine grape	plastid	38.75	38.93
VIT_01s0011g03400.t01	Wine grape	plasma membrane	35.53	37.91
VIT_06s0004g03520.t01	Wine grape	plasma membrane	32.15	34.66
VIT_06s0004g03530.t01	Wine grape	plasma membrane	32.15	34.66
VIT_08s0040g00830.t01	Wine grape	peroxisome	33.28	34.56
VIT_04s0008g03580.t01	Wine grape	plasma membrane	50.48	26.59
VIT_17s0000g05550.t01	Wine grape	plasma membrane	35.21	12.78

Protein Annotations

EntrezGene:100241176	wikigene:100241176	MapMan:24.2.2.9	ProteinID:CBI36110	ProteinID:CBI36110.3	UniProt:D7U0G4
EMBL:FN596494	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	EntrezGene:LOC100241176
wikigene:LOC100241176	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF157	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI00015C887F	ArrayExpress:VIT_09s0002g04130	EnsemblPlantsGene:VIT_09s0002g04130
EnsemblPlants:VIT_09s0002g04130.t01	unigene:Vvi.60	RefSeq:XP_002279092	RefSeq:XP_002279092.1	RefSeq:XP_010654644.1	RefSeq:XP_010654645.1
RefSeq:XP_010654646.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3805236..3809167

Molecular Weight (calculated)

69061.5 Da

IEP (calculated)

9.209

GRAVY (calculated)

0.209

Length

622 amino acids

Sequence
(BLAST)

001: MEVEANSEQR KMSQRAKGGL ITMPFIIANE AFERVASYGL LPNMILYLIQ DYHLGVAKGT NILFLWSAAT NFLPVVGAFL SDSYLGRFLT IGLGSITSLL
101: GMILLWLTAM IPKTKPPHCD LLTQSCKAPT AAQFILLYSS FALMSIGAGG VRPCSLAFGA DQLDKRDNPK NERVLESFFS WYYASAALSV VIALTGIVYI
201: QVHLGWRVGF GVPAILMFFA ALLFFLASPF YIKQKASRSL LTGFVQVLVV AYKNRKLAFP PRNTDGWYHY SKDSKLVVPT DRLRFLNKAC IIRSPERDIN
301: SDGLASNPWS LCTVDQVEEL KALIKVIPMW STGIMMSINT SNSSFPVLQA NSMDRHVFSS FQIPAGSYAM FLVIVLFLWV ALYDRVILPL ASKVRGKRVR
401: LGVKQRMGIG LFLSCLGMVV AAIVENVRRR KAIRQGLLNN PQTLVGMSAM WLVPQYCLYG LAEAFNAIGQ TEFYYSEFPK SMSSIAAALF GLGMAVANLL
501: ASVILSAVNH LTSRGGKESW VSNNINKGHY DNYYWLLAIM SAINLLYYLV CSYFYGPCVE QGTKVSDEGK SMEGENELSK LSNGARDEVE SLKDDEKLSK
601: FKDEVEGLKD EEELSKLRQS PS

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.