Factsheet for VIT_01s0011g03400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 3
mitochondrion 2
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75378	Soybean	plasma membrane	74.61	75.52
PGSC0003DMT400037693	Potato	plasma membrane	73.07	73.45
Solyc05g009500.2.1	Tomato	plasma membrane	71.53	72.77
KRH75379	Soybean	plasma membrane	59.69	72.5
CDY69402	Canola	plasma membrane	36.02	70.47
AT1G68570.1	Thale cress	cytosol, peroxisome, plasma membrane	71.87	70.3
CDY38595	Canola	cytosol, peroxisome, plasma membrane	71.36	70.27
Bra004320.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.5	69.43
Bra038366.1-P	Field mustard	plasma membrane	55.23	69.4
Bra038367.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.36	68.87
GSMUA_Achr5P24480_001	Banana	plasma membrane	67.92	67.81
Bra004030.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.61	67.11
CDY07377	Canola	cytosol, peroxisome, plasma membrane	68.61	67.11
CDY54537	Canola	cytosol, peroxisome, plasma membrane	71.01	66.99
CDY65728	Canola	cytosol	22.81	66.83
CDY04237	Canola	cytosol, peroxisome, plasma membrane	66.9	65.55
EER88193	Sorghum	cytosol, golgi, peroxisome	62.95	61.68
Zm00001d045667_P001	Maize	cytosol, nucleus, peroxisome	62.78	61.62
HORVU7Hr1G042120.1	Barley	cytosol	62.26	58.83
Os06t0264500-01	Rice	extracellular	60.21	58.79
TraesCS7A01G206400.1	Wheat	cytosol, nucleus, peroxisome	62.26	58.74
TraesCS7B01G113600.2	Wheat	cytosol, nucleus, peroxisome	61.75	58.73
TraesCS7D01G209200.1	Wheat	cytosol, nucleus, peroxisome	62.09	58.58
VIT_08s0040g00830.t01	Wine grape	peroxisome	58.32	56.76
CDX96007	Canola	cytosol, peroxisome, plasma membrane	59.69	50.29
VIT_14s0066g02590.t01	Wine grape	plasma membrane	40.31	40.17
VIT_11s0016g03600.t01	Wine grape	plasma membrane	37.56	37.56
VIT_01s0026g01490.t01	Wine grape	plastid	38.94	36.67
VIT_09s0002g04130.t01	Wine grape	plasma membrane	37.91	35.53
VIT_06s0004g03530.t01	Wine grape	plasma membrane	33.28	33.62
VIT_06s0004g03520.t01	Wine grape	plasma membrane	33.1	33.45
VIT_04s0008g03580.t01	Wine grape	plasma membrane	36.88	18.2
VIT_17s0000g05550.t01	Wine grape	plasma membrane	39.11	13.3

Protein Annotations

EntrezGene:100250961	wikigene:100250961	MapMan:11.6.4.1	MapMan:24.2.2.9	ProteinID:CCB50921	ProteinID:CCB50921.1
UniProt:F6HEX6	EMBL:FN595752	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010336	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	GO:GO:0097708	InterPro:IPR020846	EntrezGene:LOC100250961
wikigene:LOC100250961	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF178	SUPFAM:SSF103473	TIGR:TC57134	TIGR:TC57470	TMHMM:TMhelix	UniParc:UPI00015C7E30
ArrayExpress:VIT_01s0011g03400	EnsemblPlantsGene:VIT_01s0011g03400	EnsemblPlants:VIT_01s0011g03400.t01	unigene:Vvi.1218	RefSeq:XP_002282337	RefSeq:XP_002282337.2
RefSeq:XP_010647749.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3076982..3080343

Molecular Weight (calculated)

64502.6 Da

IEP (calculated)

8.840

GRAVY (calculated)

0.216

Length

583 amino acids

Sequence
(BLAST)

001: MGGMEKKGSH GGRTKGGLIT MPFIFANEAC EKLAVVGFSA NMITYLTQQL HLPLTKAANT ITNFSGTASL TPLLGAFISD AYAGRFWTIT VASILWQMGM
101: TSLTLSAVLP QLRPPPCKGE HQVCQEADGG QLAILYGSLL LTALGAGGIR PCVVAFGADQ FDETDPKEKT KTWNFFNWYY FVMGASILVA VTVLVYIQDN
201: VGWGWGLGIP TTAMFLSIIT FVVGYPLYRN LDPVGSPFTR LLQVCVAASK KRNLRMVSDP NLLYENDELD ASISAAGKLL HTNELKFLDK AAIVTEEDDI
301: KSSQAPNLWR LNTVHRVEEL KSVIRMGPIW ASGILLITAY AQQGTFSLQQ ARTMDRRLIN SFQIPPGSMT VFSMSSMLIT IALYDRLLIR VARRFTGLDR
401: GITFLQRMWI GFVISIVATL VAGFVEVKRK QAASAYGLVN SPKSTIPISV LWLVPQYSLH GIAEAFMSIG HLEFFYDQAP ESMKSTGSAL FWTAIAFGNF
501: VSTFLVSLVH KYSAGPDGSN WLPDDNLNKG KLEKFYWLLT LLQVVNLIYY SFCAKFYTFK PIQIRMKEVD TSEEDGIQLT SRV

Best Arabidopsis Sequence Match ( AT1G68570.1 )
(BLAST)

001: MEEQSKNKIS EEEKQLHGRP NRPKGGLITM PFIFANEICE KLAVVGFHAN MISYLTTQLH LPLTKAANTL TNFAGTSSLT PLLGAFIADS FAGRFWTITF
101: ASIIYQIGMT LLTISAIIPT LRPPPCKGEE VCVVADTAQL SILYVALLLG ALGSGGIRPC VVAFGADQFD ESDPNQTTKT WNYFNWYYFC MGAAVLLAVT
201: VLVWIQDNVG WGLGLGIPTV AMFLSVIAFV GGFQLYRHLV PAGSPFTRLI QVGVAAFRKR KLRMVSDPSL LYFNDEIDAP ISLGGKLTHT KHMSFLDKAA
301: IVTEEDNLKP GQIPNHWRLS TVHRVEELKS VIRMGPIGAS GILLITAYAQ QGTFSLQQAK TMNRHLTNSF QIPAGSMSVF TTVAMLTTII FYDRVFVKVA
401: RKFTGLERGI TFLHRMGIGF VISIIATLVA GFVEVKRKSV AIEHGLLDKP HTIVPISFLW LIPQYGLHGV AEAFMSIGHL EFFYDQAPES MRSTATALFW
501: MAISIGNYVS TLLVTLVHKF SAKPDGSNWL PDNNLNRGRL EYFYWLITVL QAVNLVYYLW CAKIYTYKPV QVHHSKEDSS PVKEELQLSN RSLVDE

Arabidopsis Description

NPF3.1Protein NRT1/ PTR FAMILY 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX20]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.