Factsheet for VIT_01s0026g01490.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 1
vacuole 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	61.71	63.04
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	61.39	62.6
KRH74756	Soybean	plastid	61.39	61.29
KRH69380	Soybean	plastid	61.87	60.89
KRG99183	Soybean	cytosol, peroxisome, plasma membrane, plastid	60.42	60.13
CDY56086	Canola	cytosol, peroxisome, plasma membrane	57.19	59.9
Bra007886.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.03	59.73
CDY53067	Canola	cytosol, peroxisome, plasma membrane	57.03	59.43
Bra016259.1-P	Field mustard	plastid	58.97	58.68
CDY11647	Canola	plastid	58.64	58.64
CDY38767	Canola	plastid	58.8	58.52
CDY48389	Canola	cytosol, peroxisome, plasma membrane	57.35	58.48
CDY23545	Canola	cytosol, peroxisome, plasma membrane	57.19	58.32
CDY40280	Canola	plasma membrane	51.86	56.51
AT1G69870.1	Thale cress	cytosol, nucleus, plasma membrane	56.54	56.45
AT1G27080.1	Thale cress	cytosol, golgi, plasma membrane	52.5	56.42
CDY25813	Canola	cytosol, peroxisome, plasma membrane	51.53	56.16
Bra012429.1-P	Field mustard	cytosol, peroxisome, plasma membrane	51.53	56.16
CDY28441	Canola	cytosol, peroxisome, plasma membrane	51.37	55.99
Bra003979.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.05	54.07
GSMUA_Achr4P17590_001	Banana	plasma membrane	37.0	51.23
GSMUA_Achr2P12500_001	Banana	extracellular, mitochondrion, plasma membrane, plastid	39.9	50.82
TraesCS3D01G414400.1	Wheat	plasma membrane	48.95	50.25
GSMUA_Achr7P01710_001	Banana	cytosol, peroxisome, plasma membrane	46.04	50.09
VIT_14s0066g02590.t01	Wine grape	plasma membrane	47.33	50.09
TraesCS3B01G454100.1	Wheat	plasma membrane	48.95	50.08
HORVU3Hr1G092870.1	Barley	plasma membrane	48.95	50.0
Os01t0913300-01	Rice	plasma membrane	48.3	49.83
TraesCS3A01G418800.1	Wheat	plasma membrane	49.43	49.2
TraesCS3B01G454000.1	Wheat	plasma membrane	47.82	48.6
TraesCS3D01G414300.1	Wheat	plasma membrane	47.01	47.94
TraesCS3A01G418700.1	Wheat	plasma membrane	46.53	47.45
KXG37624	Sorghum	plasma membrane	39.1	40.0
VIT_11s0016g03600.t01	Wine grape	plasma membrane	36.83	39.11
Os04t0660900-01	Rice	plasma membrane, plastid	39.74	38.99
VIT_01s0011g03400.t01	Wine grape	plasma membrane	36.67	38.94
VIT_09s0002g04130.t01	Wine grape	plasma membrane	38.93	38.75
EES13016	Sorghum	cytosol, nucleus, plasma membrane	39.9	38.65
VIT_06s0004g03530.t01	Wine grape	plasma membrane	35.22	37.78
VIT_06s0004g03520.t01	Wine grape	plasma membrane	35.06	37.61
VIT_08s0040g00830.t01	Wine grape	peroxisome	36.03	37.23
Zm00001d001976_P001	Maize	plastid	38.93	35.97
VIT_04s0008g03580.t01	Wine grape	plasma membrane	37.16	19.48
VIT_17s0000g05550.t01	Wine grape	plasma membrane	43.94	15.87

Protein Annotations

EntrezGene:100250071	wikigene:100250071	MapMan:24.2.2.9	ProteinID:CBI32029	ProteinID:CBI32029.3	UniProt:D7TNF6
EMBL:FN596002	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	EntrezGene:LOC100250071
wikigene:LOC100250071	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF20	SUPFAM:SSF103473	TIGR:TC62421	TMHMM:TMhelix	UniParc:UPI00015CB23D	ArrayExpress:VIT_01s0026g01490
EnsemblPlantsGene:VIT_01s0026g01490	EnsemblPlants:VIT_01s0026g01490.t01	unigene:Vvi.14394	RefSeq:XP_002269340	RefSeq:XP_002269340.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:10547449..10551377

Molecular Weight (calculated)

68526.6 Da

IEP (calculated)

8.619

GRAVY (calculated)

0.196

Length

619 amino acids

Sequence
(BLAST)

001: MSTVDAKHQA SPLTSSWSSS PPPKSKPLDN EPEKSKHDAV VSSDVSDEGP RKPGGWNSMV YILGNETFER LATFGLLANF MVYLLNEFHL DQVYATNVLN
101: IWSGTTNFAP LVGAFISDAC VGRFRTIAFA SFASLLGMVT LTLTSWIPQL HPPSCTEDQQ QNDQCTGPTS AQMGILFLGL GFLTIGTGGI RPCSIPFGVD
201: QFDPTTEQGR RGINSFYNWY YTSFTLVLMI ALTLVVYIQD SVSWVLGFGI PTLLMVGSII LFFLGTRVYV YVKPEGSIFS GIARVFVAAY KKRRVKIPVE
301: GEKEGAYYDP PLTKGSIVAK LPFTKRFRWL NKAAVILEGE KDANGCPSNQ WRLCSIQQVE EVKCLLKIIP VWASGIICFT AISQQGTFTV SQALKMDRHL
401: GPKFQIPAGS LIVISMLTVG IWVPFYDRIL VPALQKITKH EGGITLLQRM GIGIVFSILS MVVSGLVERE RRASAILQAG PHGIAPMSVM WLAPQLILMG
501: FAEAFNIIGQ IEFYNKEFPE NMRSIANSLF FCTIAGASYL SSLVVVIVHD VTGKAGRSAW LTKNINQGKV DYYYYLLAGM GVLNLIYFLF CARRYRYKSG
601: HGVTEEEPHL DLELNQLKH

Best Arabidopsis Sequence Match ( AT1G69870.1 )
(BLAST)

001: MVLEDRKDGS SLPGRSGSFS KSSPSELDVV DPYKRISSPG SILDAEKVEK KPGGWRAVSF ILGNETLERL GSIGLLANFM VYLTKVFHLE QVDAANVINI
101: WSGFTNLTPL VGAYISDTYV GRFKTIAFAS FATLLGLITI TLTASFPQLH PASCNSQDPL SCGGPNKLQI GVLLLGLCFL SVGSGGIRPC SIPFGVDQFD
201: QRTEEGVKGV ASFFNWYYMT FTVVLIITQT VVVYIQDQVS WIIGFSIPTG LMALAVVMFF AGMKRYVYVK PEGSIFSGIA QVIVAARKKR KLKLPAEDDG
301: TVTYYDPAIK SSVLSKLHRS NQFRCLDKAA VVIEGDLTPE GPPADKWRLC SVQEVEEVKC LIRIVPIWSA GIISLAAMTT QGTFTVSQAL KMDRNLGPKF
401: EIPAGSLSVI SLLTIGIFLP FYDRVFVPFM RRITGHKSGI TLLQRIGTGI VFAIFSMIVA GIVERMRRIR SINAGDPTGM TPMSVFWLSP QLILMGLCEA
501: FNIIGQIEFF NSQFPEHMRS IANSLFSLSF AGSSYLSSFL VTVVHKFSGG HDRPDWLNKN LNAGKLDYFY YLIAVLGVVN LVYFWYCARG YRYKVGLPIE
601: DFEEDKSSDD VEMTSKKSMK

Arabidopsis Description

NPF2.13Protein NRT1/ PTR FAMILY 2.13 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX77]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.