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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES13016 Sorghum cytosol, nucleus, plasma membrane 75.04 71.05
Os04t0660900-01 Rice plasma membrane, plastid 68.43 65.61
CDY40280 Canola plasma membrane 38.35 40.85
CDY25813 Canola cytosol, peroxisome, plasma membrane 38.35 40.85
CDY28441 Canola cytosol, peroxisome, plasma membrane 38.02 40.49
Bra012429.1-P Field mustard cytosol, peroxisome, plasma membrane 37.85 40.32
VIT_01s0026g01490.t01 Wine grape plastid 40.0 39.1
KRH74756 Soybean plastid 39.83 38.87
Bra007886.1-P Field mustard cytosol, peroxisome, plasma membrane 37.85 38.75
CDY56086 Canola cytosol, peroxisome, plasma membrane 37.85 38.75
AT1G27080.1 Thale cress cytosol, golgi, plasma membrane 36.86 38.72
CDY53067 Canola cytosol, peroxisome, plasma membrane 37.85 38.55
CDY48389 Canola cytosol, peroxisome, plasma membrane 38.18 38.06
AT1G69870.1 Thale cress cytosol, nucleus, plasma membrane 38.68 37.74
CDY23545 Canola cytosol, peroxisome, plasma membrane 37.69 37.56
KRH69380 Soybean plastid 39.01 37.52
CDY11647 Canola plastid 38.18 37.32
Solyc05g006920.2.1 Tomato cytosol, peroxisome, plasma membrane 37.19 37.07
CDY38767 Canola plastid 38.02 36.98
Bra016259.1-P Field mustard plastid 38.02 36.98
PGSC0003DMT400045466 Potato cytosol, peroxisome, plasma membrane 36.86 36.8
KRG99183 Soybean cytosol, peroxisome, plasma membrane, plastid 37.52 36.5
EER91066 Sorghum cytosol, peroxisome, plasma membrane 35.7 36.42
KRG99182 Soybean plasma membrane 34.55 36.41
EES16414 Sorghum cytosol, peroxisome, plasma membrane 34.88 35.34
KXG24141 Sorghum cytosol, peroxisome, plasma membrane 34.55 35.19
EER98133 Sorghum plasma membrane 37.85 35.18
CDY11648 Canola plasma membrane 31.57 34.66
Bra016260.1-P Field mustard plasma membrane 31.41 34.48
CDY38766 Canola plasma membrane 31.41 34.48
EER88193 Sorghum cytosol, golgi, peroxisome 33.88 34.45
AT1G69860.1 Thale cress plasma membrane 31.57 34.41
EES18230 Sorghum cytosol 34.38 33.93
EER89657 Sorghum cytosol, peroxisome, plasma membrane 33.22 33.56
EES19523 Sorghum plasma membrane 33.39 33.28
Bra003979.1-P Field mustard cytosol, peroxisome, plasma membrane 18.84 33.14
EES19524 Sorghum cytosol, peroxisome, plasma membrane 32.4 32.72
EES18229 Sorghum plastid 34.05 32.65
OQU78006 Sorghum cytosol 32.07 32.28
KXG21716 Sorghum cytosol, peroxisome, plasma membrane 29.92 31.26
EES03649 Sorghum cytosol, peroxisome, plasma membrane 29.75 31.25
EES03650 Sorghum plasma membrane 28.76 29.9
OQU83363 Sorghum plasma membrane 27.93 29.49
OQU80662 Sorghum plasma membrane 24.46 28.24
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9UniProt:A0A1B6QI72GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:IPR020846EnsemblPlants:KXG37624ProteinID:KXG37624ProteinID:KXG37624.1InterPro:MFS_domInterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF156EnsemblPlantsGene:SORBI_3001G099400SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI00081ABE38SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:+:7605662..7608670
Molecular Weight (calculated)
65774.1 Da
IEP (calculated)
9.556
GRAVY (calculated)
0.303
Length
605 amino acids
Sequence
(BLAST)
001: MSMATEEEAA GEGGRHRRHR GWRAVAFIIG FFAAASMANS SFSTPLTSYL MSRYNMKPNA ATNLNNIFSG MSSFAPVVGA FVADAFWGRF RTMLLGSVFG
101: VIGMVVITLS ATIRQLKPPS CSAVAQQAGT CVGPSTLHRA VLYVGMGLLV VSAGGTNPTA LPFGADQFDV TDERQKAGLT RYFNWYYAIA MTSTFLVLTA
201: IVYVQDKVSW GLGFAIPTVL TLVAFAVFLA GMAVYVYVPP EGSIFTSVAR VAVASCRKWR LRLPHPDDAR RQEEVLYNKQ HNHPDPAAAG DGRPGRVLRL
301: PLTLQLSFLN KAAIVTDADE LRADGSPARP WNLCSVQQVE EVKCLVKIVP VWVSGVVWFV VMTEMINYTY IQSVTMDLHM GRRFTIPPVS ILAVLYLAVA
401: LFVPVYDLLI VRAAQLLTKA RAGGSGGGIT LLQRQGAGQV VGSLAFVLAA VVERRRRSSA LRHGDGMSPL SVFLLAPQLA VMGVSAAFTM IGQMEFYNTQ
501: FPDQMRTLAN AAFYCAQGAS SYLATLVVNI VNARTRRHGG WVSDDINAGR LDYFYYAMAV LGAVNFVYFL VCSHFYRYKA EQPADSPGPQ LPCDSGSASM
601: QQVLM
Best Arabidopsis Sequence Match ( AT1G27080.1 )
(BLAST)
001: MGVVENRKIL PEKKLGGWRA ITFILGNETL EKLGSIGVSA NFMLYLRNVF HMEPVEAFNV YYLWMGLTNF APLLGALISD AYIGRFKTIA YASLFSILGL
101: MTVTLTACLP QLHPPPCNNP HPDECDDPNK LQLGILFLGL GFLSIGSGGI RPCSIPFGVD QFDQRTEQGL KGVASFFNWY YLTLTMVLIF SHTVVVYLQT
201: VSWVIGFSIP TSLMACAVVL FFVGMRFYVY VKPEGSVFSG IARVIVAARK KRDLKISLVD DGTEEYYEPP VKPGVLSKLP LTDQFKFLDK AAVILDGDLT
301: SEGVPANKWR LCSIQEVEEV KCLIRVVPVW SAGIISIVAM TTQATFMVFQ ATKMDRHMGP HFEIPAASIT VISYITIGIW VPIYEHLLVP FLWRMRKFRV
401: TLLQRMGIGI VFAILSMFTA GFVEGVRRTR ATEMTQMSVF WLALPLILMG LCESFNFIGL IEFFNSQFPE HMRSIANSLF PLSFAAANYL SSLLVTTVHK
501: VSGTKDHPDW LNKDLDRGKL DYFYYLIAVL GVVNLVYFWY CAHRYQYKAG SQIEDFNEEK SLLDIEPNQR HDQSPS
Arabidopsis Description
NPF2.12Protein NRT1/ PTR FAMILY 2.12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFX9]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.