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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os05t0338900-00 Rice plasma membrane 27.29 77.07
TraesCS7D01G119800.1 Wheat plasma membrane 72.88 75.9
TraesCS7D01G120200.1 Wheat cytosol, plasma membrane, vacuole 73.4 74.82
TraesCS7A01G121700.1 Wheat golgi, peroxisome, plasma membrane 72.54 73.81
TraesCS7D01G119900.1 Wheat plasma membrane 72.37 73.77
HORVU7Hr1G025680.3 Barley plasma membrane 72.19 73.33
TraesCS7B01G020500.1 Wheat plasma membrane 71.5 72.89
HORVU7Hr1G025670.1 Barley plasma membrane 71.33 72.84
TraesCS7B01G020300.1 Wheat plasma membrane 72.71 70.76
TraesCS7A01G121600.1 Wheat plastid 67.53 70.71
TraesCS7B01G020200.1 Wheat peroxisome, plasma membrane, vacuole 39.72 59.28
GSMUA_Achr10P... Banana plasma membrane 46.63 56.6
GSMUA_Achr6P15780_001 Banana plasma membrane 46.46 53.91
Solyc06g075500.2.1 Tomato plasma membrane 45.94 48.99
PGSC0003DMT400016889 Potato plasma membrane 45.77 48.01
PGSC0003DMT400019426 Potato plasma membrane 45.6 47.74
Solyc06g075480.2.1 Tomato plasma membrane 45.6 47.65
Solyc06g075450.1.1 Tomato extracellular, plasma membrane, vacuole 44.39 47.07
PGSC0003DMT400019420 Potato plasma membrane 44.39 47.07
VIT_06s0004g03530.t01 Wine grape plasma membrane 46.8 46.97
VIT_06s0004g03520.t01 Wine grape plasma membrane 46.63 46.79
PGSC0003DMT400056834 Potato endoplasmic reticulum, plasma membrane 16.75 46.63
Solyc06g075490.1.1 Tomato plasma membrane 43.52 45.9
KRH22952 Soybean plasma membrane 42.14 45.1
PGSC0003DMT400019427 Potato endoplasmic reticulum, plasma membrane 16.23 44.98
PGSC0003DMT400019424 Potato mitochondrion 26.08 44.94
Solyc11g072570.1.1 Tomato plasma membrane 41.8 43.29
PGSC0003DMT400065310 Potato plasma membrane 41.45 43.24
Solyc11g072580.1.1 Tomato plasma membrane 40.41 42.62
Solyc06g075440.1.1 Tomato plasma membrane 38.51 42.0
PGSC0003DMT400019419 Potato plasma membrane 36.44 41.7
Bra033836.1-P Field mustard plasma membrane 37.31 41.38
CDX99152 Canola plasma membrane 39.72 41.29
AT3G45680.1 Thale cress plasma membrane 39.55 41.04
PGSC0003DMT400065303 Potato plasma membrane 37.13 40.87
CDY12696 Canola plasma membrane 36.1 40.43
CDY48147 Canola plasma membrane 38.34 40.29
Solyc11g072560.1.1 Tomato plasma membrane 35.75 40.27
CDX81495 Canola plasma membrane 36.1 40.27
AT3G45700.1 Thale cress plasma membrane 38.0 40.15
AT3G45650.2 Thale cress plasma membrane 40.24 39.9
Bra033955.1-P Field mustard plasma membrane 37.82 39.89
CDX86030 Canola plasma membrane 18.65 39.71
CDY18499 Canola plasma membrane 38.17 39.68
AT3G45690.1 Thale cress plasma membrane 35.23 39.53
Bra021295.1-P Field mustard plasma membrane 38.0 39.5
AT3G45720.1 Thale cress plasma membrane 37.82 39.46
CDX99151 Canola plasma membrane 37.65 39.28
AT3G45660.2 Thale cress plasma membrane 38.69 38.75
AT3G45710.1 Thale cress plasma membrane 37.31 38.57
CDX86031 Canola plasma membrane 10.02 37.42
EES18230 Sorghum cytosol 33.85 31.97
EER88193 Sorghum cytosol, golgi, peroxisome 32.82 31.93
EER91066 Sorghum cytosol, peroxisome, plasma membrane 32.47 31.7
EER89657 Sorghum cytosol, peroxisome, plasma membrane 32.64 31.55
OQU78006 Sorghum cytosol 32.64 31.45
EES16414 Sorghum cytosol, peroxisome, plasma membrane 31.43 30.49
EES18229 Sorghum plastid 33.16 30.43
KXG37624 Sorghum plasma membrane 31.26 29.92
EES03650 Sorghum plasma membrane 30.05 29.9
KXG24141 Sorghum cytosol, peroxisome, plasma membrane 30.4 29.63
EES19523 Sorghum plasma membrane 30.92 29.49
EES19524 Sorghum cytosol, peroxisome, plasma membrane 30.4 29.38
EES03649 Sorghum cytosol, peroxisome, plasma membrane 28.5 28.65
PGSC0003DMT400016891 Potato plasma membrane 23.32 28.3
EER98133 Sorghum plasma membrane 31.61 28.11
EES13016 Sorghum cytosol, nucleus, plasma membrane 30.05 27.23
OQU83363 Sorghum plasma membrane 25.39 25.65
OQU80662 Sorghum plasma membrane 21.59 23.86
Bra038280.1-P Field mustard plasma membrane 38.0 19.7
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9UniProt:A0A1B6P7X3GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:IPR020846EnsemblPlants:KXG21716ProteinID:KXG21716ProteinID:KXG21716.1InterPro:MFS_domInterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF19EnsemblPlantsGene:SORBI_3009G099000SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI00081AE74ASEG:seg:::
Description
hypothetical protein
Coordinates
chr9:+:38258489..38275612
Molecular Weight (calculated)
62110.6 Da
IEP (calculated)
9.084
GRAVY (calculated)
0.422
Length
579 amino acids
Sequence
(BLAST)
001: METNVPEEKR TSASRQGLHV DHESLQQPQS DHRRKGGWIT FPFLGAAMMG LGVAMSGVLS NLVVYLIKEY NVPSVDAAQI SNIVAGCLSL APVAGAVVAD
101: AFFGCYPIVA ISMAFSVLSS VVFTLTASLR GLRPAPCHLG AGSPCEPASA GQMAALYAGV FLMCVSAAGS RFNQATMGAD QFDSAADRDV LFNWFFVFLY
201: ASSVVGSTVI VYVQDTVSWT LGFGISAASS VVGLVALLLG TRYYRRSAVR GSPFTGLAQV AVAAARKWKV NVPTSGELKF YHGRPRRGDA DDKAGNGDTD
301: LAPSDSFSFL NRAALITDGD TVAAVDGSTV IRPWRVCTVQ QVEDLKTVLR ILPLWSAAIV LSVAIGVQIN FTILQALVMD RAVGRFVIPA GSMIVGTLVA
401: VVVSLGLLDR VLLPLWRRLV RHDPTPLQRI GAGHVITIVS MAASAVIERQ RLATVHARGE EGNPAWVSPL SAMWLVLPFA LSGFGEALHF PGQVTLYYQE
501: FPPSLKNTAT GMVAMIVALG FYLSTALIGI VRRATAWLPD NMNASRLENL YWLLAGLVSF NFGYYMLCAR LYKYQNVGK
Best Arabidopsis Sequence Match ( AT3G45650.1 )
(BLAST)
001: MASSVTGDAE TAISADSSTK RRGGGWITFP FMIATLLGLT IAAWGWLLNL IVYLIEEFNV KSIAAAQIAN IVSGCICMVP AVAAIASDSF FGTIPVISVS
101: AFISLMGVAL LTLTASLDTL RPRPCETASI LCQSPSKTQL GVLYTAITLA SIGTGGTRFT LATAGANQYE KTKDQGSFFN WFFFTTYLAG AISATAIVYT
201: EDNISWTLGF GLSVAANFFS FLVFVSGKRF YKHDKPLGSP FTSLLCVIFA ALRKRKAVVS TNEKDYHNES ITMPTKSFRF FNRAALKQED EVKPDGTIRN
301: PWRLCSVQQV EDFKAVIRII PLALATIFLS TPIAMQLSLT VLQGLVMDRR LGPSFKIPAG SLQVITLLST CLFIIVNDRV LYPFYQKLTG KHLTPLQRVG
401: IGHAFNILSM AVTAIVEAKR LKIVQKGHFL GSSSVADMSV LWLFPPLVIV GIGEAFHFPG NVALCYQEFP ESMRSTATSI TSVVIGICFY TSTALIDLIQ
501: RTTAWLPDDI NHGRVDNVYW ILVIGGVLNL GYFLVCSWLY RYRNLKDDDH KQAANVSH
Arabidopsis Description
NAXT1Nitrate excretion transporter1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSG9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.