Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021295.1-P | Field mustard | plasma membrane | 81.36 | 81.51 |
| CDY18499 | Canola | plasma membrane | 81.36 | 81.51 |
| CDY12696 | Canola | plasma membrane | 75.45 | 81.43 |
| CDX81495 | Canola | plasma membrane | 75.63 | 81.31 |
| AT3G45690.1 | Thale cress | plasma membrane | 75.09 | 81.2 |
| Bra033955.1-P | Field mustard | plasma membrane | 79.75 | 81.06 |
| AT3G45700.1 | Thale cress | plasma membrane | 75.81 | 77.19 |
| AT3G45710.1 | Thale cress | plasma membrane | 75.63 | 75.36 |
| AT3G45720.1 | Thale cress | plasma membrane | 74.01 | 74.41 |
| AT3G45650.2 | Thale cress | plasma membrane | 66.67 | 63.7 |
| AT3G45660.2 | Thale cress | plasma membrane | 62.9 | 60.73 |
| PGSC0003DMT400019427 | Potato | endoplasmic reticulum, plasma membrane | 19.18 | 51.2 |
| Solyc06g075490.1.1 | Tomato | plasma membrane | 50.36 | 51.18 |
| PGSC0003DMT400016889 | Potato | plasma membrane | 50.54 | 51.09 |
| PGSC0003DMT400019426 | Potato | plasma membrane | 49.82 | 50.27 |
| Solyc06g075480.2.1 | Tomato | plasma membrane | 49.64 | 50.0 |
| VIT_06s0004g03530.t01 | Wine grape | plasma membrane | 51.61 | 49.91 |
| VIT_06s0004g03520.t01 | Wine grape | plasma membrane | 51.61 | 49.91 |
| Solyc06g075500.2.1 | Tomato | plasma membrane | 48.57 | 49.91 |
| PGSC0003DMT400019420 | Potato | plasma membrane | 48.75 | 49.82 |
| KRH22952 | Soybean | plasma membrane | 48.03 | 49.54 |
| PGSC0003DMT400056834 | Potato | endoplasmic reticulum, plasma membrane | 18.46 | 49.52 |
| Solyc06g075450.1.1 | Tomato | extracellular, plasma membrane, vacuole | 48.03 | 49.08 |
| PGSC0003DMT400019424 | Potato | mitochondrion | 29.39 | 48.81 |
| PGSC0003DMT400065303 | Potato | plasma membrane | 45.52 | 48.29 |
| PGSC0003DMT400065310 | Potato | plasma membrane | 47.49 | 47.75 |
| Solyc11g072580.1.1 | Tomato | plasma membrane | 46.77 | 47.54 |
| Solyc06g075440.1.1 | Tomato | plasma membrane | 44.98 | 47.27 |
| Solyc11g072570.1.1 | Tomato | plasma membrane | 47.31 | 47.23 |
| PGSC0003DMT400019419 | Potato | plasma membrane | 42.47 | 46.84 |
| Solyc11g072560.1.1 | Tomato | plasma membrane | 42.65 | 46.3 |
| TraesCS7A01G054100.1 | Wheat | plasma membrane | 43.73 | 43.49 |
| TraesCS4A01G440700.1 | Wheat | plasma membrane | 43.55 | 43.47 |
| TraesCS7D01G049400.1 | Wheat | plasma membrane | 43.55 | 43.39 |
| GSMUA_Achr6P15780_001 | Banana | plasma membrane | 38.17 | 42.69 |
| TraesCS7D01G120200.1 | Wheat | cytosol, plasma membrane, vacuole | 43.19 | 42.43 |
| TraesCS7D01G119900.1 | Wheat | plasma membrane | 43.19 | 42.43 |
| TraesCS7A01G121700.1 | Wheat | golgi, peroxisome, plasma membrane | 43.19 | 42.35 |
| HORVU7Hr1G025670.1 | Barley | plasma membrane | 43.01 | 42.33 |
| TraesCS5B01G152000.1 | Wheat | plasma membrane | 43.01 | 42.18 |
| TraesCS7A01G054000.2 | Wheat | plasma membrane | 41.58 | 42.11 |
| TraesCS7B01G020500.1 | Wheat | plasma membrane | 42.83 | 42.08 |
| TraesCS5D01G158500.1 | Wheat | plasma membrane | 43.01 | 41.96 |
| TraesCS7D01G049300.1 | Wheat | plasma membrane | 41.4 | 41.92 |
| TraesCS4A01G440400.1 | Wheat | plasma membrane | 41.4 | 41.92 |
| TraesCS7D01G119800.1 | Wheat | plasma membrane | 41.58 | 41.73 |
| TraesCS4A01G440500.1 | Wheat | plasma membrane | 40.86 | 41.38 |
| GSMUA_Achr10P... | Banana | plasma membrane | 35.3 | 41.3 |
| HORVU7Hr1G025680.3 | Barley | plasma membrane | 42.11 | 41.23 |
| TraesCS4A01G440600.1 | Wheat | plasma membrane | 40.68 | 41.2 |
| TraesCS5A01G153200.1 | Wheat | plasma membrane | 43.01 | 41.1 |
| Os05t0338900-00 | Rice | plasma membrane | 15.05 | 40.98 |
| TraesCS4A01G440300.1 | Wheat | plasma membrane | 39.96 | 40.47 |
| TraesCS7B01G020300.1 | Wheat | plasma membrane | 42.83 | 40.17 |
| HORVU5Hr1G047970.5 | Barley | mitochondrion | 42.83 | 39.77 |
| TraesCS7A01G121600.1 | Wheat | plastid | 39.25 | 39.6 |
| KXG21716 | Sorghum | cytosol, peroxisome, plasma membrane | 41.04 | 39.55 |
| TraesCS7B01G020200.1 | Wheat | peroxisome, plasma membrane, vacuole | 25.27 | 36.34 |
| AT1G18880.1 | Thale cress | cytosol, peroxisome, plasma membrane | 34.59 | 32.88 |
| AT1G27080.1 | Thale cress | cytosol, golgi, plasma membrane | 32.44 | 31.42 |
| AT1G68570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 32.62 | 30.54 |
| AT5G11570.1 | Thale cress | plasma membrane | 25.99 | 30.15 |
| AT1G69870.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.33 | 30.0 |
| AT3G16180.1 | Thale cress | plasma membrane | 31.36 | 29.61 |
| AT1G52190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.36 | 28.83 |
| AT5G28470.2 | Thale cress | plasma membrane | 27.78 | 27.63 |
| AT5G62680.1 | Thale cress | golgi, peroxisome, vacuole | 30.47 | 27.6 |
| AT1G69860.1 | Thale cress | plasma membrane | 27.42 | 27.57 |
| AT3G47960.1 | Thale cress | plasma membrane | 30.29 | 26.57 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.9 | EntrezGene:823710 | ProteinID:AEE78059.1 | EMBL:AK117660 | ArrayExpress:AT3G45680 |
| EnsemblPlantsGene:AT3G45680 | RefSeq:AT3G45680 | TAIR:AT3G45680 | RefSeq:AT3G45680-TAIR-G | EnsemblPlants:AT3G45680.1 | TAIR:AT3G45680.1 |
| Unigene:At.36001 | ProteinID:CAB75781.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006857 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0015112 |
| GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0042128 | GO:GO:0055085 |
| GO:GO:0071472 | InterPro:IPR020846 | InterPro:MFS_dom | InterPro:MFS_trans_sf | RefSeq:NP_190154.1 | PFAM:PF00854 |
| PO:PO:0000037 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | InterPro:POT_fam | ScanProsite:PS01022 | PANTHER:PTHR11654 |
| PANTHER:PTHR11654:SF19 | InterPro:PTR2_symporter_CS | UniProt:Q9M175 | SUPFAM:SSF103473 | TMHMM:TMhelix | UniParc:UPI00000487DB |
| SEG:seg | : | : | : | : | : |
Description
NPF2.3Protein NRT1/ PTR FAMILY 2.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M175]
Coordinates
chr3:+:16770888..16773185
Molecular Weight (calculated)
61253.3 Da
IEP (calculated)
8.800
GRAVY (calculated)
0.423
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLVSGDKE AQISGDPGSK RGGWITFPFM LATLLGLSVT SFGWVMNLIV FLIEEFNIKS IAAAQISNVA NGCLSMLPVV AAILADSFFG NIPVIAASSF
101: ISLLGIVLLT LIASLDYLRP RPCEAGSVLC TPPSKLHLGI LYTALALVTT GAGGTRFTMA SAGANQYEKP KEQGSFFNWY FLTLYAGAIT GATAIVYIQD
201: NASWKLGFGL CAAANLISFI VFVSGKRYYK HDKPMGSPFT SLIRVVVSAT VKRKAVISCN EEDYHHYGLE KEVKTSAAMP SKSFRFLNRA ALMTKDDLNQ
301: KEGSVNNIWR LCSVQEVEDF KAILRVFPLW LSIIFVSTPM VMQTSLIVLQ ALVTDRGLGP NFKVPAGSLQ VIIIITACIV IIMNNWLVFP MYKKLTHKLL
401: TPLQKVGIGQ VLTILSMALS AVVEAKRLKT VENGHPMSVL WLFPPLVIVG IGEAFQFPAN IELFYGEFPE SLRNTATSLT SVVIGISFYL STALIDLIQR
501: TTAWLPNDIN HGRVDNVYWL LVIGGILNFG YFLVCSWVYK YRNLKDNDQE QDPKDGTM
101: ISLLGIVLLT LIASLDYLRP RPCEAGSVLC TPPSKLHLGI LYTALALVTT GAGGTRFTMA SAGANQYEKP KEQGSFFNWY FLTLYAGAIT GATAIVYIQD
201: NASWKLGFGL CAAANLISFI VFVSGKRYYK HDKPMGSPFT SLIRVVVSAT VKRKAVISCN EEDYHHYGLE KEVKTSAAMP SKSFRFLNRA ALMTKDDLNQ
301: KEGSVNNIWR LCSVQEVEDF KAILRVFPLW LSIIFVSTPM VMQTSLIVLQ ALVTDRGLGP NFKVPAGSLQ VIIIITACIV IIMNNWLVFP MYKKLTHKLL
401: TPLQKVGIGQ VLTILSMALS AVVEAKRLKT VENGHPMSVL WLFPPLVIVG IGEAFQFPAN IELFYGEFPE SLRNTATSLT SVVIGISFYL STALIDLIQR
501: TTAWLPNDIN HGRVDNVYWL LVIGGILNFG YFLVCSWVYK YRNLKDNDQE QDPKDGTM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.