Factsheet for AT1G27080.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, cytosol

Predictor Summary:

plastid 1
golgi 2
endoplasmic reticulum 1
plasma membrane 2
vacuole 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40280	Canola	plasma membrane	75.69	76.76
CDY28441	Canola	cytosol, peroxisome, plasma membrane	75.52	76.58
CDY25813	Canola	cytosol, peroxisome, plasma membrane	75.52	76.58
Bra012429.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.52	76.58
AT1G69870.1	Thale cress	cytosol, nucleus, plasma membrane	68.58	63.71
VIT_01s0026g01490.t01	Wine grape	plastid	56.42	52.5
KRH74756	Soybean	plastid	55.73	51.77
KRG99183	Soybean	cytosol, peroxisome, plasma membrane, plastid	54.86	50.8
KRH69380	Soybean	plastid	54.86	50.24
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	51.91	49.26
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	51.39	48.84
HORVU3Hr1G092870.1	Barley	plasma membrane	47.22	44.88
GSMUA_Achr4P17590_001	Banana	plasma membrane	34.72	44.74
Os01t0913300-01	Rice	plasma membrane	46.53	44.67
TraesCS3B01G454100.1	Wheat	plasma membrane	46.88	44.63
TraesCS3D01G414400.1	Wheat	plasma membrane	46.7	44.61
AT1G69860.1	Thale cress	plasma membrane	42.71	44.32
GSMUA_Achr2P12500_001	Banana	extracellular, mitochondrion, plasma membrane, plastid	37.33	44.24
TraesCS3B01G454000.1	Wheat	plasma membrane	46.18	43.68
TraesCS3D01G414300.1	Wheat	plasma membrane	46.01	43.66
TraesCS3A01G418800.1	Wheat	plasma membrane	47.05	43.57
GSMUA_Achr7P01710_001	Banana	cytosol, peroxisome, plasma membrane	42.88	43.41
TraesCS3A01G418700.1	Wheat	plasma membrane	45.49	43.16
AT1G18880.1	Thale cress	cytosol, peroxisome, plasma membrane	40.28	39.52
AT5G62680.1	Thale cress	golgi, peroxisome, vacuole	41.32	38.64
AT3G47960.1	Thale cress	plasma membrane	42.36	38.36
AT5G28470.2	Thale cress	plasma membrane	36.98	37.97
KXG37624	Sorghum	plasma membrane	38.72	36.86
EES13016	Sorghum	cytosol, nucleus, plasma membrane	39.24	35.37
AT1G68570.1	Thale cress	cytosol, peroxisome, plasma membrane	36.28	35.07
AT3G16180.1	Thale cress	plasma membrane	35.76	34.86
AT5G11570.1	Thale cress	plasma membrane	28.12	33.68
Zm00001d001976_P001	Maize	plastid	38.89	33.43
AT3G45690.1	Thale cress	plasma membrane	29.17	32.56
Os04t0660900-01	Rice	plasma membrane, plastid	35.59	32.49
AT1G52190.1	Thale cress	cytosol, peroxisome, plasma membrane	34.2	32.45
AT3G45680.1	Thale cress	plasma membrane	31.42	32.44
AT3G45710.1	Thale cress	plasma membrane	29.86	30.71
AT3G45700.1	Thale cress	plasma membrane	28.47	29.93
AT3G45720.1	Thale cress	plasma membrane	28.65	29.73
AT3G45650.2	Thale cress	plasma membrane	29.34	28.94
AT3G45660.2	Thale cress	plasma membrane	28.82	28.72

Protein Annotations

MapMan:24.2.2.9	EntrezGene:839597	ProteinID:AAF79856.1	ProteinID:AEE30777.1	ProteinID:ANM59485.1	ArrayExpress:AT1G27080
EnsemblPlantsGene:AT1G27080	RefSeq:AT1G27080	TAIR:AT1G27080	RefSeq:AT1G27080-TAIR-G	EnsemblPlants:AT1G27080.1	TAIR:AT1G27080.1
EMBL:EU266070	GO:GO:0000003	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0006857	GO:GO:0007154	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0009991	GO:GO:0010098	GO:GO:0015293	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0042128	GO:GO:0043562	GO:GO:0048316	GO:GO:0055085	GO:GO:0080054
InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	RefSeq:NP_001321840.1	RefSeq:NP_174028.2	Symbol:NRT1.6
PFAM:PF00854	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0001078	PO:PO:0001185
PO:PO:0004507	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008003
PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020006	PO:PO:0020030	PO:PO:0025022	PO:PO:0025281	InterPro:POT_fam	ScanProsite:PS01022
PANTHER:PTHR11654	PANTHER:PTHR11654:SF20	InterPro:PTR2_symporter_CS	UniProt:Q9LFX9	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0001615EA1	SEG:seg	:	:	:	:

Description

NPF2.12Protein NRT1/ PTR FAMILY 2.12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFX9]

Coordinates

chr1:+:9400326..9403905

Molecular Weight (calculated)

64933.8 Da

IEP (calculated)

7.534

GRAVY (calculated)

0.320

Length

576 amino acids

Sequence
(BLAST)

001: MGVVENRKIL PEKKLGGWRA ITFILGNETL EKLGSIGVSA NFMLYLRNVF HMEPVEAFNV YYLWMGLTNF APLLGALISD AYIGRFKTIA YASLFSILGL
101: MTVTLTACLP QLHPPPCNNP HPDECDDPNK LQLGILFLGL GFLSIGSGGI RPCSIPFGVD QFDQRTEQGL KGVASFFNWY YLTLTMVLIF SHTVVVYLQT
201: VSWVIGFSIP TSLMACAVVL FFVGMRFYVY VKPEGSVFSG IARVIVAARK KRDLKISLVD DGTEEYYEPP VKPGVLSKLP LTDQFKFLDK AAVILDGDLT
301: SEGVPANKWR LCSIQEVEEV KCLIRVVPVW SAGIISIVAM TTQATFMVFQ ATKMDRHMGP HFEIPAASIT VISYITIGIW VPIYEHLLVP FLWRMRKFRV
401: TLLQRMGIGI VFAILSMFTA GFVEGVRRTR ATEMTQMSVF WLALPLILMG LCESFNFIGL IEFFNSQFPE HMRSIANSLF PLSFAAANYL SSLLVTTVHK
501: VSGTKDHPDW LNKDLDRGKL DYFYYLIAVL GVVNLVYFWY CAHRYQYKAG SQIEDFNEEK SLLDIEPNQR HDQSPS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.