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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400045466 Potato cytosol, peroxisome, plasma membrane 90.12 90.26
VIT_01s0026g01490.t01 Wine grape plastid 62.6 61.39
KRH74756 Soybean plastid 60.3 59.03
KRH69380 Soybean plastid 59.47 57.39
KRG99183 Soybean cytosol, peroxisome, plasma membrane, plastid 57.99 56.59
CDY53067 Canola cytosol, peroxisome, plasma membrane 53.71 54.88
Bra007886.1-P Field mustard cytosol, peroxisome, plasma membrane 53.38 54.82
CDY40280 Canola plasma membrane 51.24 54.75
CDY56086 Canola cytosol, peroxisome, plasma membrane 53.21 54.65
CDY25813 Canola cytosol, peroxisome, plasma membrane 50.58 54.05
Bra012429.1-P Field mustard cytosol, peroxisome, plasma membrane 50.41 53.87
CDY11647 Canola plastid 54.86 53.8
CDY28441 Canola cytosol, peroxisome, plasma membrane 50.25 53.7
Bra016259.1-P Field mustard plastid 54.86 53.54
AT1G69870.1 Thale cress cytosol, nucleus, plasma membrane 54.53 53.39
CDY38767 Canola plastid 54.7 53.38
CDY23545 Canola cytosol, peroxisome, plasma membrane 52.55 52.55
CDY48389 Canola cytosol, peroxisome, plasma membrane 52.55 52.55
AT1G27080.1 Thale cress cytosol, golgi, plasma membrane 49.26 51.91
KRG99182 Soybean plasma membrane 48.27 51.05
CDY38766 Canola plasma membrane 44.32 48.82
Bra016260.1-P Field mustard plasma membrane 44.32 48.82
Bra003979.1-P Field mustard cytosol, peroxisome, plasma membrane 27.51 48.55
CDY11648 Canola plasma membrane 43.99 48.46
GSMUA_Achr2P12500_001 Banana extracellular, mitochondrion, plasma membrane, plastid 38.55 48.15
Os01t0913300-01 Rice plasma membrane 46.95 47.5
AT1G69860.1 Thale cress plasma membrane 43.33 47.39
TraesCS3B01G454100.1 Wheat plasma membrane 46.95 47.11
TraesCS3D01G414400.1 Wheat plasma membrane 46.79 47.1
HORVU3Hr1G092870.1 Barley plasma membrane 46.95 47.03
GSMUA_Achr4P17590_001 Banana plasma membrane 34.6 46.98
TraesCS3A01G418800.1 Wheat plasma membrane 46.79 45.66
Solyc06g071570.2.1 Tomato plasma membrane 43.0 45.16
GSMUA_Achr7P01710_001 Banana cytosol, peroxisome, plasma membrane 42.17 44.99
Solyc03g113420.2.1 Tomato plasma membrane 43.16 44.63
TraesCS3B01G454000.1 Wheat plasma membrane 44.65 44.5
TraesCS3A01G418700.1 Wheat plasma membrane 44.32 44.32
TraesCS3D01G414300.1 Wheat plasma membrane 44.15 44.15
Solyc03g113430.2.1 Tomato plasma membrane 42.17 43.76
Solyc06g071090.1.1 Tomato endoplasmic reticulum, plasma membrane 20.92 41.91
Solyc05g009500.2.1 Tomato plasma membrane 36.08 38.22
Solyc03g113440.2.1 Tomato plasma membrane 36.57 37.25
KXG37624 Sorghum plasma membrane 37.07 37.19
EES13016 Sorghum cytosol, nucleus, plasma membrane 38.22 36.31
Os04t0660900-01 Rice plasma membrane, plastid 37.4 35.97
Solyc05g005980.2.1 Tomato plasma membrane 34.27 35.92
Solyc04g005070.2.1 Tomato plasma membrane 33.44 35.43
Solyc12g007220.1.1 Tomato cytosol, peroxisome, plasma membrane 33.77 34.98
Solyc03g120560.2.1 Tomato plasma membrane 34.6 34.83
Solyc05g006010.2.1 Tomato plasma membrane 33.44 34.7
Zm00001d001976_P001 Maize plastid 38.06 34.48
Solyc05g006000.2.1 Tomato plasma membrane 33.28 34.47
Solyc06g005070.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid 17.79 34.29
Solyc05g005950.2.1 Tomato plasma membrane 32.45 34.2
Solyc08g066940.2.1 Tomato plasma membrane 28.83 34.11
Solyc05g005970.2.1 Tomato plasma membrane 32.29 33.79
Solyc11g072570.1.1 Tomato plasma membrane 30.81 33.45
Solyc05g005920.2.1 Tomato plasma membrane 32.13 33.45
Solyc05g005990.2.1 Tomato plasma membrane 25.21 33.33
Solyc05g005940.2.1 Tomato plasma membrane 31.63 33.16
Solyc06g075490.1.1 Tomato plasma membrane 29.98 33.15
Solyc06g075500.2.1 Tomato plasma membrane 29.49 32.97
Solyc12g044310.1.1 Tomato plasma membrane 34.1 32.91
Solyc05g005960.2.1 Tomato plasma membrane 31.14 32.81
Solyc06g075450.1.1 Tomato extracellular, plasma membrane, vacuole 29.49 32.78
Solyc03g120550.2.1 Tomato plasma membrane 34.27 32.5
Solyc06g075480.2.1 Tomato plasma membrane 29.32 32.13
Solyc06g075440.1.1 Tomato plasma membrane 27.84 31.83
Solyc11g072560.1.1 Tomato plasma membrane 26.36 31.13
Solyc11g072580.1.1 Tomato plasma membrane 27.68 30.6
Solyc12g095810.1.1 Tomato plasma membrane 31.63 29.22
Solyc05g005910.2.1 Tomato plasma membrane 32.78 26.36
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:IPR020846UniProt:K4BWL8InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_fam
ScanProsite:PS01022PANTHER:PTHR11654PANTHER:PTHR11654:SF20InterPro:PTR2_symporter_CSSUPFAM:SSF103473EnsemblPlantsGene:Solyc05g006920.2
EnsemblPlants:Solyc05g006920.2.1TMHMM:TMhelixUniParc:UPI000276589CSEG:seg::
Description
No Description!
Coordinates
chr5:-:1519772..1523618
Molecular Weight (calculated)
67787.8 Da
IEP (calculated)
8.903
GRAVY (calculated)
0.164
Length
607 amino acids
Sequence
(BLAST)
001: MEDKKNNNSS MSFPLPENGV SDEEKQTSGS DSPAKTRRRK PGGWRAMPYV LGNETFERLA SIGLIANFMQ FLLQVFHLDQ VSASNVLNIW SGVTNFIPLI
101: GAFISDAYIG RFWTIASASI FEMMGMLTLT MIPWLPKLHP PPCKLGQQCK KPNKSQMGFL VMGLGFLSIG SAGIRPCSIP FGVDQFDSTT DEGRKGIASF
201: FNWYYTSFTL VLIIAVTLVV YIQDSVSWVL GFGIPTILIF LSIVLFFIGT KVYVHVKPQG SVFSSFIQVF VASYKKRNLK LPDERESNVT VFYDPLLPQG
301: SIVNKLPLTH KHRWLNKAAI VMKDEVNRDG DCTNKWRLCS IQQIEEVKCV LKIIPIWSAG VICFTAMAQQ GTFTISQALK MDRHLGPNFQ IPPGSLSVIS
401: MITVGIWLPV YDRLIVPSLT KVTRIEGGIT LLHRIGIGIA FSILSMVVAG ITEKMRRNSA ITHNSPDGIA PVTVMRLAPQ LVLMGFAEAF NILGQIEFYN
501: KEFPENMSSV ANSLFSCTVA GASYLSSLLV NVLHNTTGGN GHLDWLTNDI NKGRIDYYYY LIAGLGVLNL FYFLYVASRY EYKTRVVIDD DRIKGYGDDH
601: ELHDMKY
Best Arabidopsis Sequence Match ( AT1G69870.1 )
(BLAST)
001: MVLEDRKDGS SLPGRSGSFS KSSPSELDVV DPYKRISSPG SILDAEKVEK KPGGWRAVSF ILGNETLERL GSIGLLANFM VYLTKVFHLE QVDAANVINI
101: WSGFTNLTPL VGAYISDTYV GRFKTIAFAS FATLLGLITI TLTASFPQLH PASCNSQDPL SCGGPNKLQI GVLLLGLCFL SVGSGGIRPC SIPFGVDQFD
201: QRTEEGVKGV ASFFNWYYMT FTVVLIITQT VVVYIQDQVS WIIGFSIPTG LMALAVVMFF AGMKRYVYVK PEGSIFSGIA QVIVAARKKR KLKLPAEDDG
301: TVTYYDPAIK SSVLSKLHRS NQFRCLDKAA VVIEGDLTPE GPPADKWRLC SVQEVEEVKC LIRIVPIWSA GIISLAAMTT QGTFTVSQAL KMDRNLGPKF
401: EIPAGSLSVI SLLTIGIFLP FYDRVFVPFM RRITGHKSGI TLLQRIGTGI VFAIFSMIVA GIVERMRRIR SINAGDPTGM TPMSVFWLSP QLILMGLCEA
501: FNIIGQIEFF NSQFPEHMRS IANSLFSLSF AGSSYLSSFL VTVVHKFSGG HDRPDWLNKN LNAGKLDYFY YLIAVLGVVN LVYFWYCARG YRYKVGLPIE
601: DFEEDKSSDD VEMTSKKSMK
Arabidopsis Description
NPF2.13Protein NRT1/ PTR FAMILY 2.13 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX77]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.