Factsheet for Solyc05g006000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006010.2.1	Tomato	plasma membrane	93.86	94.02
PGSC0003DMT400040231	Potato	plasma membrane	93.0	93.0
PGSC0003DMT400040285	Potato	plasma membrane	90.61	90.77
Solyc05g005990.2.1	Tomato	plasma membrane	67.58	86.27
Solyc04g005070.2.1	Tomato	plasma membrane	74.57	76.27
Solyc05g005920.2.1	Tomato	plasma membrane	57.17	57.46
Solyc05g005980.2.1	Tomato	plasma membrane	56.66	57.34
Solyc05g005970.2.1	Tomato	plasma membrane	54.95	55.52
Solyc05g005940.2.1	Tomato	plasma membrane	54.44	55.09
Solyc05g005950.2.1	Tomato	plasma membrane	53.92	54.86
Solyc05g005960.2.1	Tomato	plasma membrane	53.07	53.99
Solyc08g066940.2.1	Tomato	plasma membrane	46.25	52.83
KRH04819	Soybean	plasma membrane	49.32	50.09
VIT_11s0016g03600.t01	Wine grape	plasma membrane	49.83	50.09
KRH16178	Soybean	plasma membrane	46.42	46.5
Solyc05g005910.2.1	Tomato	plasma membrane	57.51	44.64
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	41.47	44.18
Solyc12g007220.1.1	Tomato	cytosol, peroxisome, plasma membrane	43.17	43.17
Solyc12g044310.1.1	Tomato	plasma membrane	41.98	39.11
Solyc03g120560.2.1	Tomato	plasma membrane	39.25	38.14
Solyc03g120550.2.1	Tomato	plasma membrane	39.25	35.94
Solyc05g009500.2.1	Tomato	plasma membrane	34.98	35.78
Solyc03g113430.2.1	Tomato	plasma membrane	34.98	35.04
Solyc03g113420.2.1	Tomato	plasma membrane	34.98	34.92
Solyc12g095810.1.1	Tomato	plasma membrane	39.08	34.86
Solyc06g071570.2.1	Tomato	plasma membrane	34.13	34.6
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	17.41	33.66
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	34.47	33.28
Solyc06g075500.2.1	Tomato	plasma membrane	30.72	33.15
Solyc06g075450.1.1	Tomato	extracellular, plasma membrane, vacuole	30.55	32.78
Solyc06g075480.2.1	Tomato	plasma membrane	30.89	32.67
Solyc06g075490.1.1	Tomato	plasma membrane	30.03	32.06
Solyc11g072580.1.1	Tomato	plasma membrane	28.5	30.42
Solyc11g072560.1.1	Tomato	plasma membrane	26.62	30.35
Solyc06g075440.1.1	Tomato	plasma membrane	27.3	30.13
Solyc11g072570.1.1	Tomato	plasma membrane	27.82	29.16
Solyc06g005070.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	15.53	28.89
Solyc03g113440.2.1	Tomato	plasma membrane	28.84	28.36
VIT_04s0008g03580.t01	Wine grape	plasma membrane	49.66	24.64

Protein Annotations

MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	UniProt:K4BWC7
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150
SUPFAM:SSF103473	EnsemblPlantsGene:Solyc05g006000.2	EnsemblPlants:Solyc05g006000.2.1	TMHMM:TMhelix	UniParc:UPI00027671C2	SEG:seg

Description

No Description!

Coordinates

chr5:+:742219..744379

Molecular Weight (calculated)

65015.2 Da

IEP (calculated)

6.716

GRAVY (calculated)

0.362

Length

586 amino acids

Sequence
(BLAST)

001: MGKNTEQEEE FLLNHSQNST KGGLKTIPFI IVNESCERLA SFGLQPNMII YITKFYNINA AHASVLINLW SAVSNVLSIL GAFISDSYIG RFRAVAIGTI
101: SSLIGMLVLW LTTIFPQLRP LPCGQYQHDC NGTTAAQLAA ILCSFGLISI GAGFVRPCSI ALGADQLGNK ENLDNERLLD SYFSWFYASV GVSIVLAVTV
201: IVYIQDHFGW QVGFGVPALL MVLSVSVFLV GSPHYIKAKP EGSLFTGLFQ VAVAAFRKRH INVQLNYNDD SYYKAPESKL LEPSTDFRCL NRACIIEDPN
301: MELKPDGKAS DPWSLCSVEQ VKIMKCFLTV LPMWSTCIML LVSFSQPLSI YQLLTVDRHI TPRFEIPAGS FGMITVLSLT IWMAFYDRAL VPLLSRYTGL
401: PTGISPFSRM GIGLFLGIVA TVLSAITETI RRNKAMNAGF EDDPNAVLNM SSMWFVPQLA LYGVAEALNV VGQIEFIYSL FPKTMSSFAA ALYTFGLALS
501: NLISSLLVSV VDNITSARCN TSWLATNINR GHLDYYCWLM TFLCVINFLY FLAVCRFTDK QKHDGRSSLF PEAEEEHSEN KFFHGV

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.