Factsheet for PGSC0003DMT400040285

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040231	Potato	plasma membrane	92.65	92.49
Solyc05g006010.2.1	Tomato	plasma membrane	90.77	90.77
Solyc05g006000.2.1	Tomato	plasma membrane	90.77	90.61
PGSC0003DMT400040284	Potato	plasma membrane	86.5	86.5
PGSC0003DMT400004850	Potato	plasma membrane	74.02	75.57
PGSC0003DMT400010578	Potato	plasma membrane	45.3	60.5
PGSC0003DMT400010582	Potato	plasma membrane	54.7	57.97
PGSC0003DMT400040282	Potato	plasma membrane	57.09	57.69
PGSC0003DMT400074797	Potato	plasma membrane	49.23	54.34
PGSC0003DMT400040275	Potato	plasma membrane	54.19	53.19
VIT_11s0016g03600.t01	Wine grape	plasma membrane	51.11	51.29
KRH04819	Soybean	plasma membrane	49.4	50.09
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	32.82	48.12
KRH16178	Soybean	plasma membrane	47.52	47.52
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	41.37	44.0
PGSC0003DMT400000812	Potato	plasma membrane, plastid	41.37	42.76
PGSC0003DMT400068025	Potato	plasma membrane	42.05	41.07
PGSC0003DMT400006545	Potato	plasma membrane	32.48	40.69
PGSC0003DMT400075590	Potato	plasma membrane	39.49	40.1
PGSC0003DMT400037693	Potato	plasma membrane	35.56	35.86
PGSC0003DMT400065197	Potato	mitochondrion	35.73	35.73
PGSC0003DMT400065196	Potato	plasma membrane	34.87	34.52
PGSC0003DMT400069660	Potato	plasma membrane	33.68	34.08
PGSC0003DMT400019424	Potato	mitochondrion	19.32	33.63
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	34.36	33.17
PGSC0003DMT400019426	Potato	plasma membrane	31.11	32.91
PGSC0003DMT400065303	Potato	plasma membrane	29.23	32.51
PGSC0003DMT400016889	Potato	plasma membrane	30.43	32.25
PGSC0003DMT400019420	Potato	plasma membrane	30.09	32.23
PGSC0003DMT400065326	Potato	plasma membrane	32.99	31.59
PGSC0003DMT400019419	Potato	plasma membrane	26.67	30.83
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	10.94	30.77
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	10.94	30.62
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	30.26	29.75
PGSC0003DMT400065310	Potato	plasma membrane	27.86	29.37
VIT_04s0008g03580.t01	Wine grape	plasma membrane	49.91	24.72
PGSC0003DMT400016891	Potato	plasma membrane	16.24	19.92

Protein Annotations

EntrezGene:102579133	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:M1B9N3	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400015595	PGSC:PGSC0003DMG400015595
EnsemblPlants:PGSC0003DMT400040285	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI000295E017	RefSeq:XP_006355949.1	:	:	:	:

Description

LATD/NIP [Source:PGSC_GENE;Acc:PGSC0003DMG400015595]

Coordinates

chr5:+:7359482..7362610

Molecular Weight (calculated)

64811.9 Da

IEP (calculated)

6.439

GRAVY (calculated)

0.355

Length

585 amino acids

Sequence
(BLAST)

001: MENNPEKEEF LLNHSQNSTK GGLKTIPFII VNESCEKVAS FGLQPNMIIY ITKFYNMDAA RASVLISLWS AISNVLSILG AFISDSYIGR FRAVAIGTIS
101: SLIGMLVLWL TTIFPQLRPL PCGQYQHDCN GTTAAQLAAI LFSFGLISIG AGFVRPCSLA LGADQLENKE NLDNERLIDS YFNWFYASEG VSVLLAVTVI
201: VYIQDHFGWQ VGFGVPALLM VLSLSVFLIG SPHYIKVIPQ GSLFTGLFQV PVAAFRKRHI NVQLNYSDDC YYKAPQSKLL EPSTDFRCLN RACIIEDPHM
301: ELKPDGKASD PWSLCSVEQV KIMKCFLTVL PMWSTCIMLL VSLSQPLSIY QLLTVDRHIT PQFEIPAGSF GMITLLSLTI WFAFYDRALV PLLSRYTGLP
401: TGISPFSKMG IGLIVGIVAT VLSAITETIR RNKAINAGFE DDPNAVLNMS SMWFVPQLAL YGVAEALNVV GQIEFIYSQF PKTMSSFAAA LYTFGLALAN
501: LINSLLVSVV DSITSTGGKT SWLATNINRG HLDYYCWLMT SLCVINFLYF LAVCQFTDQH HHDGRSSLFP EAEEEHTANK RFHGA

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.