Factsheet for PGSC0003DMT400040284

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005990.2.1	Tomato	plasma membrane	73.16	93.25
PGSC0003DMT400040231	Potato	plasma membrane	89.4	89.25
PGSC0003DMT400040285	Potato	plasma membrane	86.5	86.5
PGSC0003DMT400004850	Potato	plasma membrane	74.53	76.09
PGSC0003DMT400010578	Potato	plasma membrane	45.98	61.42
PGSC0003DMT400040282	Potato	plasma membrane	58.29	58.89
PGSC0003DMT400010582	Potato	plasma membrane	55.56	58.88
PGSC0003DMT400074797	Potato	plasma membrane	49.91	55.09
PGSC0003DMT400040275	Potato	plasma membrane	55.9	54.87
VIT_11s0016g03600.t01	Wine grape	plasma membrane	51.45	51.63
KRH04819	Soybean	plasma membrane	49.74	50.43
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	34.02	49.87
KRH16178	Soybean	plasma membrane	48.38	48.38
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	42.22	44.91
PGSC0003DMT400000812	Potato	plasma membrane, plastid	42.73	44.17
PGSC0003DMT400075590	Potato	plasma membrane	41.88	42.53
PGSC0003DMT400068025	Potato	plasma membrane	43.42	42.4
PGSC0003DMT400006545	Potato	plasma membrane	31.79	39.83
PGSC0003DMT400037693	Potato	plasma membrane	36.07	36.38
PGSC0003DMT400019424	Potato	mitochondrion	20.17	35.12
PGSC0003DMT400065197	Potato	mitochondrion	34.53	34.53
PGSC0003DMT400019426	Potato	plasma membrane	32.48	34.36
PGSC0003DMT400065196	Potato	plasma membrane	34.36	34.01
PGSC0003DMT400016889	Potato	plasma membrane	31.79	33.7
PGSC0003DMT400069660	Potato	plasma membrane	33.16	33.56
PGSC0003DMT400019420	Potato	plasma membrane	31.28	33.52
PGSC0003DMT400065303	Potato	plasma membrane	29.4	32.7
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	33.5	32.34
PGSC0003DMT400065326	Potato	plasma membrane	33.68	32.24
PGSC0003DMT400019419	Potato	plasma membrane	27.52	31.82
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	11.28	31.58
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	11.11	31.25
PGSC0003DMT400065310	Potato	plasma membrane	28.55	30.09
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	29.91	29.41
VIT_04s0008g03580.t01	Wine grape	plasma membrane	51.45	25.49
PGSC0003DMT400016891	Potato	plasma membrane	17.44	21.38

Protein Annotations

EntrezGene:102579781	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:M1B9N2	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400015594	PGSC:PGSC0003DMG400015594
EnsemblPlants:PGSC0003DMT400040284	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0002966AEF	RefSeq:XP_006355951.1	SEG:seg	:	:	:

Description

LATD/NIP [Source:PGSC_GENE;Acc:PGSC0003DMG400015594]

Coordinates

chr5:+:7392962..7395545

Molecular Weight (calculated)

64913.2 Da

IEP (calculated)

6.572

GRAVY (calculated)

0.379

Length

585 amino acids

Sequence
(BLAST)

001: MGNNPEEEEF LLNHSQNSTK GGVKTIPFII VNESCERVAS FGLQPNMILY ITKFYNMDAA RASVLLNLWS ALSNGLAIFG AFISDSYIGR FRAIAIGTIS
101: SLIGMIVLWL TAIFPQIRPL PCGQDQLDCN AATAPQLAVI LSSFGLISIG AGFVRPCSVA FGADQLENKE NPDNERVMDT YFNWFYASVG ISISVAITVI
201: VYIQVQFGWQ VGFGVPVLLM VLAVSIYLIG SPLYIKAKPK GSLFTGLFQV AVAAFRKRHI NVQLNYSDDC YYKAPESKLL KPSIDFRCLN RACIIEDPHM
301: DLKPDGKASD PWSLCFVEQV EIMKCFLRVL PMWSTCIMLL VSFGQPLSIY QLLTMDRHIT HQFEIPAGSF GMITVLSLTI WIAFYDRALV PLLSRYTGLP
401: TGLSTFSRMG IGLFLGIVAT ALSAITETIR RNKAINAGFE DDPNAVLNMS SMWFVPQLAL YGVAEALNMV GQIEFIYSLF PKTMSSFAAA LYTFGLALAS
501: LISSLLVSMV DSITSAGGKT SWLATNINRG HLDYYCWLTT FLCVINFLYF LAICRFTDQH HHDGRSSLFP EVEEEHSENR RFHGA

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.