Factsheet for PGSC0003DMT400065200

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113440.2.1	Tomato	plasma membrane	97.82	97.65
KRH56967	Soybean	peroxisome	57.65	57.45
Bra020609.1-P	Field mustard	plasma membrane	52.27	54.37
CDY05592	Canola	plasma membrane	52.27	54.37
CDY52504	Canola	plasma membrane	52.27	54.37
AT5G28470.2	Thale cress	plasma membrane	51.09	54.19
Bra009996.1-P	Field mustard	peroxisome	51.6	53.95
CDX86198	Canola	peroxisome	51.6	53.95
CDY52480	Canola	plasma membrane	41.51	53.58
PGSC0003DMT400065197	Potato	mitochondrion	36.64	37.27
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	37.14	36.47
PGSC0003DMT400069660	Potato	plasma membrane	35.13	36.16
PGSC0003DMT400065196	Potato	plasma membrane	33.95	34.18
PGSC0003DMT400037693	Potato	plasma membrane	32.6	33.45
PGSC0003DMT400004850	Potato	plasma membrane	31.26	32.46
PGSC0003DMT400010578	Potato	plasma membrane	23.87	32.42
PGSC0003DMT400006545	Potato	plasma membrane	25.04	31.91
PGSC0003DMT400040282	Potato	plasma membrane	30.59	31.43
PGSC0003DMT400074797	Potato	plasma membrane	27.73	31.13
PGSC0003DMT400010582	Potato	plasma membrane	28.57	30.8
PGSC0003DMT400040275	Potato	plasma membrane	30.76	30.7
PGSC0003DMT400000812	Potato	plasma membrane, plastid	29.08	30.57
PGSC0003DMT400019419	Potato	plasma membrane	25.88	30.43
PGSC0003DMT400040285	Potato	plasma membrane	29.75	30.26
PGSC0003DMT400065303	Potato	plasma membrane	26.72	30.23
PGSC0003DMT400040284	Potato	plasma membrane	29.41	29.91
PGSC0003DMT400040231	Potato	plasma membrane	29.41	29.86
PGSC0003DMT400068025	Potato	plasma membrane	29.92	29.72
PGSC0003DMT400065326	Potato	plasma membrane	30.42	29.62
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	19.83	29.57
PGSC0003DMT400075590	Potato	plasma membrane	28.4	29.34
PGSC0003DMT400019420	Potato	plasma membrane	25.88	28.21
PGSC0003DMT400016889	Potato	plasma membrane	25.88	27.9
PGSC0003DMT400019426	Potato	plasma membrane	25.88	27.85
PGSC0003DMT400065310	Potato	plasma membrane	25.21	27.03
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	9.08	25.96
PGSC0003DMT400019424	Potato	mitochondrion	14.29	25.3
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	8.57	24.4
PGSC0003DMT400016891	Potato	plasma membrane	16.81	20.96

Protein Annotations

EntrezGene:102579854	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:M1CDJ5	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400025339	PGSC:PGSC0003DMG400025339
EnsemblPlants:PGSC0003DMT400065200	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF181	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI000295971C	RefSeq:XP_006367064.1	:	:	:	:

Description

Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400025339]

Coordinates

chr3:+:53135911..53138548

Molecular Weight (calculated)

66224.2 Da

IEP (calculated)

8.409

GRAVY (calculated)

0.300

Length

595 amino acids

Sequence
(BLAST)

001: MADEIINASH SSSEEEEQNI APKCSARKKG GWTAIAFILG NESFEKLASV SLISNMTTYL RTKYNMGGVF LVNVVSIWSG CSNITPIAGA FLADAHLGRF
101: LTLLFGSLAS FLGMGMVTLT AGIDELRPPH CQGNARCEDP QKWQLAYLFA GLGFMAIGSG GIRACNIAFG ADQFDTNTEK GRTQLKSFFN WWYFSFTIAL
201: IIALTVVIYI QTNISWFIGF LIPTCCLALS IMIFLIGRNS YIRLKPQGCV FIDMAKVINA ACRKRHIHDL PTASSLYDPS TRESENELSV LKHTDRFKFL
301: DKAAVIVDPN SELNTEGVAK DSWRLCNVEQ VERLKCVVGI LPVWVAGITC FITMEQMNTF GVLQVIQSNT KVGNFMIPPG WMGLASMIAL AIWIFIYECV
401: YIPNASKISK KEARLSLQIR IKIGIIMAIL CLSVAALVET RRRDLALKQG TFLSPLGIAY FLPQFILSGL TEAFAAVSVM EFLNNQVPET MRSVAGAIFF
501: LSLSIASYLN TLIVNLVEIL SRLNGGKRWL GGHDLNENKL ERFYLLIAGL GVLNFIYFHF FASRYIQSYE ESKRRKTVLE DRVDAGYVDL PEKKP

Best Arabidopsis Sequence Match ( AT5G28470.2 )
(BLAST)

001: MDVESSSPSS HALIKKEKGG WRAIKYIIAN ESFEKLASMS LIGNLSVYLM TKYNLGGVFL VNVINIWFGS CNILTLAGAF VSDAYLGRFW TLLLGSIASF
101: IGMGIFALTA ALPSLRPDAC IDPSNCSNQP AKWQLGVLFS GLGLLAIGAG GVRPCNIAFG ADQFDTSTKK GKAHLETFFN WWYFSFTVAL VIALTGVVYI
201: QTNISWVIGF VIPTACLALS ITTFVIGQHT YICAKAEGSV FADIVKVVTA ACKKRKVKPG SDITFYIGPS NDGSPTTLVR DKHRLRFFDK ASIVTNPNEL
301: NEDGNAKYKW RLCSVQQVKN LKCVTAILPV WVTGIACFIL TDQQNIYGIL QAMQMDKTFG PHNFQVPAGW MNLVSMITLA IWISLYECVI IPIVKQITGR
401: KKRLTLKHRI EIGIVMGIIC MIVAGFQEKK RRASALKNGS FVSPVSIVML LPQFALAGLT EAFSAVALME FLTVRMPEHM RAVAGAIFFL SSSIASYICT
501: LLINVIDAVT RKEGKSWLGD KDLNKNRLEN YFFIIAGIQV ANLLYFRLFA SRYATENKKG H

Arabidopsis Description

Major facilitator superfamily protein [Source:TAIR;Acc:AT5G28470]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.