Factsheet for PGSC0003DMT400010582

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
plastid 1
extracellular 4
vacuole 4
endoplasmic reticulum 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010578	Potato	plasma membrane	63.77	80.37
Solyc05g005970.2.1	Tomato	plasma membrane	82.25	78.28
Solyc05g005920.2.1	Tomato	plasma membrane	78.99	74.79
PGSC0003DMT400040282	Potato	plasma membrane	77.9	74.27
PGSC0003DMT400040275	Potato	plasma membrane	77.54	71.81
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	46.38	64.16
PGSC0003DMT400004850	Potato	plasma membrane	62.14	59.86
PGSC0003DMT400074797	Potato	plasma membrane	54.71	56.98
PGSC0003DMT400040284	Potato	plasma membrane	58.88	55.56
PGSC0003DMT400040285	Potato	plasma membrane	57.97	54.7
PGSC0003DMT400040231	Potato	plasma membrane	57.97	54.61
VIT_11s0016g03600.t01	Wine grape	plasma membrane	50.91	48.2
PGSC0003DMT400006545	Potato	plasma membrane	38.04	44.97
KRH04819	Soybean	plasma membrane	46.38	44.37
PGSC0003DMT400000812	Potato	plasma membrane, plastid	44.02	42.93
KRH16178	Soybean	plasma membrane	45.47	42.91
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	40.4	40.55
PGSC0003DMT400075590	Potato	plasma membrane	41.67	39.93
PGSC0003DMT400068025	Potato	plasma membrane	42.93	39.57
PGSC0003DMT400019419	Potato	plasma membrane	29.89	32.61
PGSC0003DMT400037693	Potato	plasma membrane	34.24	32.59
PGSC0003DMT400065303	Potato	plasma membrane	30.98	32.51
PGSC0003DMT400019424	Potato	mitochondrion	19.75	32.44
PGSC0003DMT400065197	Potato	mitochondrion	34.24	32.31
PGSC0003DMT400069660	Potato	plasma membrane	33.33	31.83
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	11.96	31.58
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	11.59	30.77
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	33.7	30.69
PGSC0003DMT400019426	Potato	plasma membrane	30.25	30.2
PGSC0003DMT400065196	Potato	plasma membrane	32.25	30.12
PGSC0003DMT400016889	Potato	plasma membrane	29.89	29.89
PGSC0003DMT400019420	Potato	plasma membrane	29.35	29.67
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	30.8	28.57
PGSC0003DMT400065326	Potato	plasma membrane	30.8	27.82
PGSC0003DMT400065310	Potato	plasma membrane	26.81	26.67
VIT_04s0008g03580.t01	Wine grape	plasma membrane	51.99	24.3
PGSC0003DMT400016891	Potato	plasma membrane	17.57	20.34

Protein Annotations

MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	UniProt:M0ZYA8
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400004134	PGSC:PGSC0003DMG400004134	EnsemblPlants:PGSC0003DMT400010582
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002966049
SEG:seg	:	:	:	:	:

Description

Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400004134]

Coordinates

chr5:+:7524932..7526789

Molecular Weight (calculated)

61850.7 Da

IEP (calculated)

7.493

GRAVY (calculated)

0.345

Length

552 amino acids

Sequence
(BLAST)

001: MIATYGLQTN MLIYLMTFYN MSAATATSIL GLWAALSNGL AIVGAIVADS YCGRFRAVAF GSISTLIGMI VLWLTTMIPQ LTSVSCSHFQ HVCNGTTTIQ
101: LAVLFSSFGF MSIGAGFVRP CSIIFGADQL ENKKNPDNQR RIASYFNWYY VSSGISTMLA VTVIIYIQDR YGWQVGFGIP IILMFLSVLM FQIGSPLYIK
201: VKAKTTENLV IGLFQAAVAA FRKRNNTRLP LTDCDEYYRW PLVSEVLTPS MDFRWLNRAC MIEDPERDLN LDGSASNPWN LSSLERVESL KALLRVLPMW
301: STGFMMSVDM GVFSFSILQT KTMDRHMFPH FEIPAASFTM FLLIALTIWI IFYDRILVPL LSKYTGQPRG LSPVTRMRIG LIVSCMSMAL SAITERIRRQ
401: KAIEEGHKDD PNALVNMSAM WFVPQYALLG MAEAAHTVGQ IEFFYSLLPK SMSSFASAMH AVGSAVSSLI GSIMVSSVDW LSSTGGKTSW LSSNINKGHL
501: DYHFWMLTFL SLLNLLYFLV VCRFYETGND EISRSPHVAD EEECDYRLLP ES

Best Arabidopsis Sequence Match ( AT1G18880.1 )
(BLAST)

001: MEVEKTEKNI AEDDESKIIY RGWKVMPFII GNETFEKLGI VGSSSNLVIY LTTVFNMKSI TAAKVVNIYG GTSNFGTIVA AFLCDSYFGR YKTLSFAMIA
101: CFLGSVAMDL TAVIHPLHPA QCAKEIGSVC NGPSIGQIMF LAGAMVLLVI GAGGIRPCNL PFGADQFDPK TKEGKRGIES FFNWYFFTFT FAQMVSLTLI
201: VYVQSNVSWS IGLAIPAILM LLGCIIFFAG SKLYVKVKAS GSPIHSITRV IVVAIKKRRL KPVGPNELYN YIASDFKNSK LGHTEQFRFL DKSAIQTQDD
301: KLNKDGSPVD AWKLCSMQQV EEVKCVIRVL PVWLSAALFY LAYIQQTTYT IFQSLQSDRR LGPGSFQIPA GSYTVFLMLG MTIFIPIYDR VLVPFLRKYT
401: GRDGGITQLQ RVGAGLFLCI TSMMVSAIVE QYRRKVALTK PTLGLAPRKG AISSMSGMWL IPQLVLMGIA DALAGVGQME FYYKQFPENM RSFAGSLYYC
501: GIGLASYLST FLLSAVHDTT EGFSGGSWLP EDLNKGRLEY FYFLVAGMMT LNLAYFLLVS HWYRYKDVVA KDKDMDKTSA EFDKVSV

Arabidopsis Description

NPF2.9Protein NRT1/ PTR FAMILY 2.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9V7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.