Factsheet for PGSC0003DMT400074797

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 4
vacuole 4
endoplasmic reticulum 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066940.2.1	Tomato	plasma membrane	78.3	80.9
PGSC0003DMT400010578	Potato	plasma membrane	47.74	57.76
PGSC0003DMT400010582	Potato	plasma membrane	56.98	54.71
PGSC0003DMT400040282	Potato	plasma membrane	56.6	51.81
PGSC0003DMT400004850	Potato	plasma membrane	55.47	51.31
PGSC0003DMT400040231	Potato	plasma membrane	55.47	50.17
PGSC0003DMT400040275	Potato	plasma membrane	56.42	50.17
PGSC0003DMT400040284	Potato	plasma membrane	55.09	49.91
PGSC0003DMT400040285	Potato	plasma membrane	54.34	49.23
VIT_11s0016g03600.t01	Wine grape	plasma membrane	53.58	48.71
KRH04819	Soybean	plasma membrane	49.25	45.23
PGSC0003DMT400006545	Potato	plasma membrane	39.43	44.75
PGSC0003DMT400000812	Potato	plasma membrane, plastid	47.17	44.17
KRH16178	Soybean	plasma membrane	47.74	43.25
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	32.26	42.86
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	43.77	42.18
PGSC0003DMT400068025	Potato	plasma membrane	46.23	40.9
PGSC0003DMT400075590	Potato	plasma membrane	42.45	39.06
PGSC0003DMT400019419	Potato	plasma membrane	32.26	33.79
PGSC0003DMT400065197	Potato	mitochondrion	36.98	33.5
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	13.21	33.49
PGSC0003DMT400037693	Potato	plasma membrane	36.42	33.28
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	12.83	32.69
PGSC0003DMT400019426	Potato	plasma membrane	33.4	32.01
PGSC0003DMT400065303	Potato	plasma membrane	31.7	31.94
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	36.42	31.85
PGSC0003DMT400019424	Potato	mitochondrion	20.19	31.85
PGSC0003DMT400065196	Potato	plasma membrane	35.28	31.64
PGSC0003DMT400016889	Potato	plasma membrane	32.83	31.52
PGSC0003DMT400019420	Potato	plasma membrane	32.26	31.32
PGSC0003DMT400069660	Potato	plasma membrane	34.15	31.31
PGSC0003DMT400065326	Potato	plasma membrane	32.08	27.82
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	31.13	27.73
PGSC0003DMT400065310	Potato	plasma membrane	28.49	27.21
VIT_04s0008g03580.t01	Wine grape	plasma membrane	56.98	25.57
PGSC0003DMT400016891	Potato	plasma membrane	18.11	20.13

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M1CU67	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400029084	PGSC:PGSC0003DMG400029084	EnsemblPlants:PGSC0003DMT400074797
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002968EE6
SEG:seg	:	:	:	:	:

Description

LATD/NIP [Source:PGSC_GENE;Acc:PGSC0003DMG400029084]

Coordinates

chr8:-:39883276..39886234

Molecular Weight (calculated)

59096.1 Da

IEP (calculated)

6.853

GRAVY (calculated)

0.418

Length

530 amino acids

Sequence
(BLAST)

001: MVIYLMKVYN LEIVTATSLL SLWSALSHGL ALLGAFVSDS FLGRFTVVAI GSISSLFGMT ILWLTTMVPQ LRPSRCDHFE INECDRPTPA QLLVLLFSFG
101: TIALGAGFVR PCSIAFGADQ LDNKENPNNK RIMESYFNWY YATIGMSTIV ATTLIVYIQD AFGWRIGFGI PAILMFFSVS AFLLGSSMYI KVGAIESLFT
201: GFFQVLVAAV RKRNIDLPVN RANYYHQSPE SESQALTSSF RCLNKACMIE DPERDINPDG FASNPWRLCS VEQVVSLKSL LRVVPMWSSN IMVQLSLNQF
301: SFATLQTKTM DRHIFSDFEI PAGSFSVFMV ITLVMWIAFY DRVLMPIKAR YTGQPGGLSP VFHMGIGLVL SAAAMVLSAI TEGIRRGIAI DQKDPQDSPN
401: INMSAMWFVP QYVLLGLADA FNAIGLVEFL YSELPKSMSS FVVAIFTLGM SVAGFFGSVL VNVVDSVTSY GGGVSWLSSN INNGHLDYYY WLLAFLNVVN
501: FLYFVLIICR YNRHEKEVKE KQCEYSTQRA

Best Arabidopsis Sequence Match ( AT1G18880.1 )
(BLAST)

001: MEVEKTEKNI AEDDESKIIY RGWKVMPFII GNETFEKLGI VGSSSNLVIY LTTVFNMKSI TAAKVVNIYG GTSNFGTIVA AFLCDSYFGR YKTLSFAMIA
101: CFLGSVAMDL TAVIHPLHPA QCAKEIGSVC NGPSIGQIMF LAGAMVLLVI GAGGIRPCNL PFGADQFDPK TKEGKRGIES FFNWYFFTFT FAQMVSLTLI
201: VYVQSNVSWS IGLAIPAILM LLGCIIFFAG SKLYVKVKAS GSPIHSITRV IVVAIKKRRL KPVGPNELYN YIASDFKNSK LGHTEQFRFL DKSAIQTQDD
301: KLNKDGSPVD AWKLCSMQQV EEVKCVIRVL PVWLSAALFY LAYIQQTTYT IFQSLQSDRR LGPGSFQIPA GSYTVFLMLG MTIFIPIYDR VLVPFLRKYT
401: GRDGGITQLQ RVGAGLFLCI TSMMVSAIVE QYRRKVALTK PTLGLAPRKG AISSMSGMWL IPQLVLMGIA DALAGVGQME FYYKQFPENM RSFAGSLYYC
501: GIGLASYLST FLLSAVHDTT EGFSGGSWLP EDLNKGRLEY FYFLVAGMMT LNLAYFLLVS HWYRYKDVVA KDKDMDKTSA EFDKVSV

Arabidopsis Description

NPF2.9Protein NRT1/ PTR FAMILY 2.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9V7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.