Factsheet for PGSC0003DMT400010578

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010582	Potato	plasma membrane	80.37	63.77
PGSC0003DMT400040282	Potato	plasma membrane	84.02	63.56
PGSC0003DMT400040275	Potato	plasma membrane	77.4	56.88
Solyc05g005910.2.1	Tomato	plasma membrane	93.15	54.04
PGSC0003DMT400004850	Potato	plasma membrane	64.38	49.21
PGSC0003DMT400074797	Potato	plasma membrane	57.76	47.74
PGSC0003DMT400040284	Potato	plasma membrane	61.42	45.98
PGSC0003DMT400040231	Potato	plasma membrane	60.96	45.56
PGSC0003DMT400040285	Potato	plasma membrane	60.5	45.3
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	39.5	43.36
VIT_11s0016g03600.t01	Wine grape	plasma membrane	54.34	40.82
KRH04819	Soybean	plasma membrane	50.46	38.3
PGSC0003DMT400006545	Potato	plasma membrane	40.18	37.69
PGSC0003DMT400000812	Potato	plasma membrane, plastid	47.49	36.75
KRH16178	Soybean	plasma membrane	48.4	36.24
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	44.52	35.45
PGSC0003DMT400075590	Potato	plasma membrane	45.66	34.72
PGSC0003DMT400068025	Potato	plasma membrane	46.8	34.22
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	15.53	32.54
PGSC0003DMT400019424	Potato	mitochondrion	24.66	32.14
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	15.07	31.73
PGSC0003DMT400065303	Potato	plasma membrane	34.93	29.09
PGSC0003DMT400019419	Potato	plasma membrane	33.1	28.66
PGSC0003DMT400019426	Potato	plasma membrane	35.16	27.85
PGSC0003DMT400016889	Potato	plasma membrane	34.25	27.17
PGSC0003DMT400065197	Potato	mitochondrion	35.84	26.84
PGSC0003DMT400069660	Potato	plasma membrane	35.39	26.82
PGSC0003DMT400037693	Potato	plasma membrane	34.7	26.21
PGSC0003DMT400019420	Potato	plasma membrane	32.65	26.19
PGSC0003DMT400065196	Potato	plasma membrane	34.47	25.55
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	33.56	24.26
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	32.42	23.87
PGSC0003DMT400065326	Potato	plasma membrane	33.1	23.73
PGSC0003DMT400065310	Potato	plasma membrane	29.68	23.42
VIT_04s0008g03580.t01	Wine grape	plasma membrane	56.62	21.0
PGSC0003DMT400016891	Potato	plasma membrane	17.58	16.14

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M0ZYA7
InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400004133	PGSC:PGSC0003DMG400004133	EnsemblPlants:PGSC0003DMT400010578	InterPro:POT_fam
PANTHER:PTHR11654	PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000295F7D4	SEG:seg

Description

LATD/NIP [Source:PGSC_GENE;Acc:PGSC0003DMG400004133]

Coordinates

chr5:+:7528121..7529797

Molecular Weight (calculated)

48634.7 Da

IEP (calculated)

6.974

GRAVY (calculated)

0.455

Length

438 amino acids

Sequence
(BLAST)

001: MNMIIYLMTY YNMTAATILA LWAAFSNGLA IVGDSYLGRF RAVAFGSIST LIGMIILWLT AKIPQLNKSL PCSHFQHVCN GTTPIQLSFV FMSIGTGFVR
101: PCSIIFGADQ LGKKENQRLL DSYFNCESLL IGLLQAVVAV FRKRNTRLPL TDCDDYYHSP LESEILTPSN DFRACVIEDP QRDLNPDGSA SNPWSLCSVE
201: QVESLKALIR VLPMWSTGFM IFVAISQFSS VLQAKTMDRH IFPHFEIPAA SFSVFMIIAL TIWITFYDRV LVPLLSKYTG QPRGLSPVIR MGIGLIVTCM
301: SMALSAITES IRRQRAIEEG HEDDPSALVN MSAMWLMPHY ALLGVAEAAH AVGQIEFYSL LPKSMSSMAS AMYTVGTAVS SLVVSILVSG VDWLSSTGGK
401: TSWLSSNINK GHLDYYFWLL TFLSLLNFFY FLVICPVI

Best Arabidopsis Sequence Match ( AT1G27080.1 )
(BLAST)

001: MGVVENRKIL PEKKLGGWRA ITFILGNETL EKLGSIGVSA NFMLYLRNVF HMEPVEAFNV YYLWMGLTNF APLLGALISD AYIGRFKTIA YASLFSILGL
101: MTVTLTACLP QLHPPPCNNP HPDECDDPNK LQLGILFLGL GFLSIGSGGI RPCSIPFGVD QFDQRTEQGL KGVASFFNWY YLTLTMVLIF SHTVVVYLQT
201: VSWVIGFSIP TSLMACAVVL FFVGMRFYVY VKPEGSVFSG IARVIVAARK KRDLKISLVD DGTEEYYEPP VKPGVLSKLP LTDQFKFLDK AAVILDGDLT
301: SEGVPANKWR LCSIQEVEEV KCLIRVVPVW SAGIISIVAM TTQATFMVFQ ATKMDRHMGP HFEIPAASIT VISYITIGIW VPIYEHLLVP FLWRMRKFRV
401: TLLQRMGIGI VFAILSMFTA GFVEGVRRTR ATEMTQMSVF WLALPLILMG LCESFNFIGL IEFFNSQFPE HMRSIANSLF PLSFAAANYL SSLLVTTVHK
501: VSGTKDHPDW LNKDLDRGKL DYFYYLIAVL GVVNLVYFWY CAHRYQYKAG SQIEDFNEEK SLLDIEPNQR HDQSPS

Arabidopsis Description

NPF2.12Protein NRT1/ PTR FAMILY 2.12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFX9]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.