Factsheet for PGSC0003DMT400040275

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005950.2.1	Tomato	plasma membrane	91.11	94.27
Solyc05g005940.2.1	Tomato	plasma membrane	89.43	92.06
Solyc05g005960.2.1	Tomato	plasma membrane	86.58	89.58
PGSC0003DMT400040282	Potato	plasma membrane	75.67	77.89
PGSC0003DMT400010582	Potato	plasma membrane	71.81	77.54
PGSC0003DMT400010578	Potato	plasma membrane	56.88	77.4
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	41.61	62.16
PGSC0003DMT400004850	Potato	plasma membrane	57.38	59.69
PGSC0003DMT400074797	Potato	plasma membrane	50.17	56.42
PGSC0003DMT400040284	Potato	plasma membrane	54.87	55.9
PGSC0003DMT400040231	Potato	plasma membrane	54.03	54.95
PGSC0003DMT400040285	Potato	plasma membrane	53.19	54.19
VIT_11s0016g03600.t01	Wine grape	plasma membrane	46.98	48.03
KRH04819	Soybean	plasma membrane	45.81	47.31
KRH16178	Soybean	plasma membrane	45.13	45.98
PGSC0003DMT400006545	Potato	plasma membrane	35.4	45.18
PGSC0003DMT400000812	Potato	plasma membrane, plastid	40.1	42.23
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	38.76	42.0
PGSC0003DMT400068025	Potato	plasma membrane	41.78	41.57
PGSC0003DMT400075590	Potato	plasma membrane	39.6	40.97
PGSC0003DMT400037693	Potato	plasma membrane	34.56	35.52
PGSC0003DMT400065197	Potato	mitochondrion	33.22	33.85
PGSC0003DMT400065303	Potato	plasma membrane	29.87	33.84
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	11.74	33.49
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	33.89	33.33
PGSC0003DMT400069660	Potato	plasma membrane	32.21	33.22
PGSC0003DMT400019426	Potato	plasma membrane	30.2	32.55
PGSC0003DMT400019424	Potato	mitochondrion	18.29	32.44
PGSC0003DMT400016889	Potato	plasma membrane	29.87	32.25
PGSC0003DMT400019419	Potato	plasma membrane	27.18	32.02
PGSC0003DMT400065196	Potato	plasma membrane	31.71	31.98
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	10.91	31.25
PGSC0003DMT400019420	Potato	plasma membrane	28.52	31.14
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	30.7	30.76
PGSC0003DMT400065310	Potato	plasma membrane	28.36	30.45
PGSC0003DMT400065326	Potato	plasma membrane	30.87	30.11
VIT_04s0008g03580.t01	Wine grape	plasma membrane	50.34	25.4
PGSC0003DMT400016891	Potato	plasma membrane	15.77	19.71

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:IPR020846	UniProt:M1B9M7	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400015591
PGSC:PGSC0003DMG400015591	EnsemblPlants:PGSC0003DMT400040275	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF150
InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000295BFC3	:	:

Description

Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400015591]

Coordinates

chr5:+:7434852..7436872

Molecular Weight (calculated)

66621.2 Da

IEP (calculated)

6.881

GRAVY (calculated)

0.345

Length

596 amino acids

Sequence
(BLAST)

001: MKLKMGTESQ VEVNTRKGGL RTMPFIICTT LTLFFYFSLV TLSLNESFER IASYGSQTNL IIYLMTYYNM SAATGTSILG IWGALSSGLA IVGAIIADSY
101: WGRFNAVAYG TIFTFIGMVI LWLTSMIPQL TTLACSQFQH VCNGPTAFQL AVLFTSFAFT SIGAGFVRPC SIMFGADQLE QKGNPENKKI VESYFNWYYA
201: STGVATMIAV TVIIYIQDRF GWQIGFGIPV ILMVLSVSTF LIGSPLYIKV KTDTENLLLG LFQAGVAAFR KRKIRLPLTG CDDYYHSPYE TEVLTPSKDF
301: RCLNRACMIE DPERDLNPDG STSNPWNLCS VERVESLKAL IRILPMWSAG FMMFVDMNVF AFSVLQTKTM DRHIFPHFEV PAASFSVFLI IALTIWITFY
401: DRVFVPLLSK YTGRPRGLSP VTRMGIGLAV SCMSMALSAI TESIRRKRAI AEGHEDDPHA LVNMSAMWFV PQYALLGIAE ATHAVGQIEF FYTLLPKSMA
501: SIASAMYTVG TAVSSLIGSF LVSSEDWLTS RGGKTSWLAS NINKGHLDYH FWILAFMSFL NLLYFLVICR FYDTGNDELP HVANEEECDY RLLHES

Best Arabidopsis Sequence Match ( AT1G18880.1 )
(BLAST)

001: MEVEKTEKNI AEDDESKIIY RGWKVMPFII GNETFEKLGI VGSSSNLVIY LTTVFNMKSI TAAKVVNIYG GTSNFGTIVA AFLCDSYFGR YKTLSFAMIA
101: CFLGSVAMDL TAVIHPLHPA QCAKEIGSVC NGPSIGQIMF LAGAMVLLVI GAGGIRPCNL PFGADQFDPK TKEGKRGIES FFNWYFFTFT FAQMVSLTLI
201: VYVQSNVSWS IGLAIPAILM LLGCIIFFAG SKLYVKVKAS GSPIHSITRV IVVAIKKRRL KPVGPNELYN YIASDFKNSK LGHTEQFRFL DKSAIQTQDD
301: KLNKDGSPVD AWKLCSMQQV EEVKCVIRVL PVWLSAALFY LAYIQQTTYT IFQSLQSDRR LGPGSFQIPA GSYTVFLMLG MTIFIPIYDR VLVPFLRKYT
401: GRDGGITQLQ RVGAGLFLCI TSMMVSAIVE QYRRKVALTK PTLGLAPRKG AISSMSGMWL IPQLVLMGIA DALAGVGQME FYYKQFPENM RSFAGSLYYC
501: GIGLASYLST FLLSAVHDTT EGFSGGSWLP EDLNKGRLEY FYFLVAGMMT LNLAYFLLVS HWYRYKDVVA KDKDMDKTSA EFDKVSV

Arabidopsis Description

NPF2.9Protein NRT1/ PTR FAMILY 2.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9V7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.