Factsheet for PGSC0003DMT400075590

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095810.1.1	Tomato	plasma membrane	95.83	84.02
KRH62051	Soybean	plasma membrane	49.48	50.18
PGSC0003DMT400006545	Potato	plasma membrane	38.19	47.11
PGSC0003DMT400068025	Potato	plasma membrane	48.78	46.91
PGSC0003DMT400010578	Potato	plasma membrane	34.72	45.66
CDX91207	Canola	cytosol, endoplasmic reticulum, plasma membrane	27.26	45.11
CDY67993	Canola	plasma membrane	41.84	43.35
PGSC0003DMT400000812	Potato	plasma membrane, plastid	42.19	42.93
AT5G11570.1	Thale cress	plasma membrane	35.76	42.83
PGSC0003DMT400074797	Potato	plasma membrane	39.06	42.45
PGSC0003DMT400040282	Potato	plasma membrane	42.19	41.97
PGSC0003DMT400040284	Potato	plasma membrane	42.53	41.88
PGSC0003DMT400004850	Potato	plasma membrane	41.49	41.71
PGSC0003DMT400010582	Potato	plasma membrane	39.93	41.67
PGSC0003DMT400040231	Potato	plasma membrane	41.15	40.44
PGSC0003DMT400040275	Potato	plasma membrane	40.97	39.6
PGSC0003DMT400040285	Potato	plasma membrane	40.1	39.49
PGSC0003DMT400040277	Potato	cytosol, nucleus, plasma membrane	24.65	35.59
PGSC0003DMT400019424	Potato	mitochondrion	20.14	34.52
PGSC0003DMT400037693	Potato	plasma membrane	34.38	34.14
PGSC0003DMT400019427	Potato	endoplasmic reticulum, plasma membrane	12.15	33.49
PGSC0003DMT400056834	Potato	endoplasmic reticulum, plasma membrane	11.63	32.21
PGSC0003DMT400065196	Potato	plasma membrane	32.99	32.15
PGSC0003DMT400065197	Potato	mitochondrion	32.64	32.14
PGSC0003DMT400016889	Potato	plasma membrane	30.73	32.07
PGSC0003DMT400019426	Potato	plasma membrane	30.73	32.01
PGSC0003DMT400069660	Potato	plasma membrane	31.77	31.66
PGSC0003DMT400019419	Potato	plasma membrane	27.6	31.42
PGSC0003DMT400045466	Potato	cytosol, peroxisome, plasma membrane	32.99	31.35
PGSC0003DMT400019420	Potato	plasma membrane	29.69	31.32
PGSC0003DMT400065303	Potato	plasma membrane	27.26	29.85
PGSC0003DMT400065326	Potato	plasma membrane	30.9	29.13
PGSC0003DMT400065200	Potato	cytosol, peroxisome, plasma membrane	29.34	28.4
PGSC0003DMT400065310	Potato	plasma membrane	26.56	27.57
PGSC0003DMT400016891	Potato	plasma membrane	15.8	19.08
CDX69747	Canola	plasma membrane	41.67	15.52
Bra008953.1-P	Field mustard	plasma membrane	41.67	15.52

Protein Annotations

EntrezGene:102599989	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:M1CVF8	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	EnsemblPlantsGene:PGSC0003DMG400029396	PGSC:PGSC0003DMG400029396
EnsemblPlants:PGSC0003DMT400075590	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF157	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI000296E6E5	RefSeq:XP_006342519.1	SEG:seg	:	:	:

Description

Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400029396]

Coordinates

chr12:+:57637416..57642347

Molecular Weight (calculated)

63539.9 Da

IEP (calculated)

5.506

GRAVY (calculated)

0.383

Length

576 amino acids

Sequence
(BLAST)

001: MENLLCEKGE MIEQTLLLDD SETQKGGFRT LPFILGNAAL TNAATSALTP NMILYLMNEY HMDMTTGSNI IYMWSAVTNI APVVGAFMAD SFVGRFQMIG
101: LGSVVTLVGM FMFWLTSVIP QARPPPCVNS NNICRSAEMF QLFFLCFSLG IVAIGAGAVK SSSLAFGSDQ LKREVYQDNA RLMERYFSWY YASYALSILV
201: ALTCLVYIQV NMGWALGFGA PVLLMLFSTL LIYLGTPFYV KLKPKSSLIT GLFQVIVASY RNRCLKLSSQ SEDIQYHQKK GSTVVLPSEK LRFLNKACIV
301: QDPRLDLSPD GEAIDPWRLC TVDQVEELKA LLKVVPIWLT GVVLSINISQ NTFPVLQANT MDRHIGSSFE IPAASFGIFA VISAILWIVL YDYLILPIAS
401: KMTGKPAHFS TKERMGFGLF LSFLSVLVVA VVEGVRRSIA IKEGYLDDPE GVIPMSAMWL LPQNSLTGFA EALHAIGQNE FYISEFPRSM SSVAASLLGV
501: GMGVGSLLAS SIMSTIDDLT KRGGEESWVS SNINKGHYDY YYLVLAGFSL VNILCYIVCS KAYGPCKEEV MEEEKP

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.