Factsheet for Bra008953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69747	Canola	plasma membrane	99.74	99.74
AT5G11570.1	Thale cress	plasma membrane	24.0	77.13
KRH62051	Soybean	plasma membrane	16.11	43.84
PGSC0003DMT400075590	Potato	plasma membrane	15.52	41.67
Bra018952.1-P	Field mustard	plasma membrane	16.3	41.58
Bra027185.1-P	Field mustard	plasma membrane	15.85	41.32
Bra033884.1-P	Field mustard	plasma membrane	6.4	39.76
Solyc12g095810.1.1	Tomato	plasma membrane	15.33	36.07
Bra012429.1-P	Field mustard	cytosol, peroxisome, plasma membrane	12.03	32.75
Bra016260.1-P	Field mustard	plasma membrane	11.19	31.4
Bra004320.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.9	31.08
Bra007886.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.71	30.63
Bra035886.1-P	Field mustard	plasma membrane	9.83	30.58
Bra004030.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.77	30.54
Bra038367.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.51	29.47
Bra016259.1-P	Field mustard	plastid	11.84	29.42
Bra031054.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.13	29.05
Bra025695.1-P	Field mustard	plasma membrane	10.8	28.79
Bra021168.1-P	Field mustard	plasma membrane	16.04	28.47
Bra038366.1-P	Field mustard	plasma membrane	8.54	28.45
Bra035885.1-P	Field mustard	peroxisome	10.35	28.37
Bra020609.1-P	Field mustard	plasma membrane	10.48	28.32
Bra009996.1-P	Field mustard	peroxisome	10.41	28.3
Bra021295.1-P	Field mustard	plasma membrane	10.09	28.01
Bra010111.1-P	Field mustard	plasma membrane	11.06	27.94
Bra018096.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.06	27.8
Bra019521.1-P	Field mustard	plasma membrane	10.93	27.66
Bra033782.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.0	27.64
Bra029248.1-P	Field mustard	plasma membrane	10.93	27.61
Bra033836.1-P	Field mustard	plasma membrane	9.31	27.59
Bra033955.1-P	Field mustard	plasma membrane	9.77	27.5
Bra003979.1-P	Field mustard	cytosol, peroxisome, plasma membrane	5.82	26.16
Bra016534.1-P	Field mustard	plastid	11.06	16.57
Bra038280.1-P	Field mustard	plasma membrane	9.51	13.16

Protein Annotations

Gene3D:2.130.10.10	MapMan:24.2.2.9	EnsemblPlantsGene:Bra008953	EnsemblPlants:Bra008953.1	EnsemblPlants:Bra008953.1-P	InterPro:EMC1
InterPro:EMC1_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	GO:GO:0072546	InterPro:IPR015943
InterPro:IPR020846	UniProt:M4CXK6	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	PFAM:PF07774
PFAM:PF13360	InterPro:POT_fam	InterPro:PQQ_beta_propeller_repeat	InterPro:PQQ_repeat	PANTHER:PTHR21573	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00564	SUPFAM:SSF103473	SUPFAM:SSF50998	TMHMM:TMhelix	UniParc:UPI0002544117	InterPro:WD40/YVTN_repeat-like_dom_sf
SEG:seg	:	:	:	:	:

Description

AT5G11560 (E=0.0) | catalytic

Coordinates

chrA10:+:14572340..14580576

Molecular Weight (calculated)

171504.0 Da

IEP (calculated)

6.871

GRAVY (calculated)

0.149

Length

1546 amino acids

Sequence
(BLAST)

0001: MDQEALLVGK ATDQHPEKRT VSTISCILAS QALEKLAYYG LVPNMILYLT VEYGMGTTEA ANILFLWSAA TNFFPLIGAF IADSYTGRFP LIGFGSSTSL
0101: LGMLSLWLAA MIQPKCDKSI DVCQPTTPFQ LLLLYSFFTL TSIGAGGVRS SCLAFAADQL QLNSTTRIST TALETLFNWY YFSVMLAYFL SESLLVFVQT
0201: KYGWQIGFGV SLAVMALSVA LFFVASPFYV KFKCEPSLVS GLFQVLVAAF RNQHVDLASE EHVISYHHET GPSFSIPSQK LRYLNKACAT SNPRQDLTLT
0301: GNSQNPWKLC TVQQVEDFKS LVNVLPIWST GIILSLVTAC QASFIVLQAK AMDRRTFIKG FEIPPGCYGV FMIISFVVFL VIYDIVVVPL VSWALRKPRL
0401: GVMVRMGAGI AISVLCISTL AIVEYVRRKR AREEGGTMLS AMWLLPYMLL GGISEALISI AQNEFFYSEL PKSMSSVATT LSGLNMAAAS LVSSWIVTAV
0501: DTATCRSWIT EDINEGHLDY YYWLMTAFSL LNVVYFVWCS KAYAKLMTKA PFSLTRSVKK TKPANAMAMA LRLYLLLLVF LSSAIVSFSL YEDQVGLMDW
0601: HQRYIGKVKH AVFHTQKTGR KRVIVSTEEN VVASLDLRHG EIFWRHVLGT KDAIDGVDIA LGKYVITLSS EGSMVRAWNL PDGQMVWETS LHSAQHSKSL
0701: LSVPVNLKVD KDYPILVFGG GYLHAVSPID GEVLWKKDFT AEGFEVQRVL QPLESSIIYV LGFLHSSEAI VYQIDSKSGE VVAEKSKAFP GGFSGEVASV
0801: SNDKVVVLDS TRSILVTISF VDEEISFQKT LISDLVEDSG EAEILSPLLS NMLAVKVNKR TIFVRVGDQG KLEMVDSLSD ETAMSDSLPV ADDQVAFASV
0901: HHEGSKIHLT VKLVDDLDTV LLRESIQMDQ HRGRVDKVFI NNYIKTDRSN GFRALIVMED HSLLLLQQGA IVWSREEGLA SVTDVTTAEL PVEKDGVSVA
1001: KVEHTLVDWL KGHILKLKGS LLLASPEDVV AIQEMRMKSS GRSKLTRDHN GFRKLFIALT RAGKLYALHT GDGRIVWSTL LKSPACARPS VISLYQWQVP
1101: HHHAMDENPS VLVVGRCGSD SSSPGVLSFV DVYTGKEISS SDIGHSVVQV MPLPFTDSTE QRLHLIADTD GHVHLYPKTS EALSIFQREF QNVYWYNVEG
1201: DDGIVRGHGM KSSCSGETAD EYCFTTRELW TVVFPSESEK IISTLTRKPN EVVHTQAKVS TDQDVLYKYV SRNLLFVATV SPKGAGEIGS VTPEESALVV
1301: YLIDTVTGRI LHRLSHQGCQ GPVHAVFSEN WVVYHYFNLR AHKYEVTVVE IYDQSRAENK NVWKLVLGKH NLTAPISSYS RPEMFTKSQS YFFPQSVKTI
1401: AVTLTAKGIT SKQLLIGTIG DQILALDKRF VDPRRTLNPS QAEKEEGIIP LTDSLPIIPQ SYITHSLKVE GLRGIVTAPA KLESTTHVFA YGVDLFYTRL
1501: APSKTYDSLT DDFSYALLLI TIVALVAAIY ITWALSEKKE LSEKWR

Best Arabidopsis Sequence Match ( AT5G11560.1 )
(BLAST)

001: MAIRVFLTLL LFLSSAILSF SLYEDQAGLT DWHQRYIGKV KHAVFHTQKT GRKRVIVSTE ENVVASLDLR HGEIFWRHVL GTKDAIDGVG IALGKYVITL
101: SSEGSTLRAW NLPDGQMVWE TSLHTAQHSK SLLSVPINLK VDKDYPITVF GGGYLHAVSA IDGEVLWKKD FTAEGFEVQR VLQAPGSSII YVLGFLHSSE
201: AVVYQIDSKS GEVVAQKSTV FPGGFSGEIS SVSSDKVVVL DSTRSILVTI GFIDGDISFQ KTPISDLVED SGTAEILSPL LSNMLAVKVN KRTIFVNVGD
301: KGKLEVVDSL SDETAMSDSL PVADDQEAFA SVHHEGSRIH LMVKLVNDLN NVLLRETIQM DQNRGRVHKV FMNNYIRTDR SNGFRALIVM EDHSLLLLQQ
401: GAIVWSREEG LASVTDVTTA ELPLEKDGVS VAKVEHTLFE WLKGHVLKLK GSLLLASPED VVAIQDLRVK SSGKNKLTRD HNGFRKLILA LTRAGKLFAL
501: HTGDGRIVWS MLLNSPSQSQ SCERPNGVSL YQWQVPHHHA MDENPSVLVV GKCGSDSSAP GVLSFVDVYT GKEISSSDIG HSVVQVMPLP ITDSKEQRLH
601: LIADTVGHVH LYPKTSEALS IFQREFQNVY WYTVEADDGI IRGHVMKGSC SGETADEYCF TTRELWTVVF PSESEKIIST LTRKPNEVVH TQAKVNTDQD
701: LLYKYVSRNL LFVATVSPKG AGEIGSVTPE ESSLVVYLID TITGRILHRL SHQGCQGPVH AVFSENWVVY HYFNLRAHKY EVTVVEIYDQ SRAENKNVWK
801: LILGKHNLTA PITSYSRPEV FTKSQSYFFA QSVKTIAVTS TAKGITSKQL LIGTIGDQIL ALDKRFVDPR RTLNPSQAEK EEGIIPLTDT LPIIPQAYVT
901: HSHKVEGLRG IVTAPSKLES TTHVFAYGVD LFYTRLAPSK TYDSLTDDFS YALLLITIVA LVAAIYITWV LSEKKELSEK WR

Arabidopsis Description

Catalytics [Source:UniProtKB/TrEMBL;Acc:F4JXW9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.