Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 5
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67993 | Canola | plasma membrane | 76.92 | 66.55 |
| CDX91207 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 44.7 | 61.78 |
| KRH62051 | Soybean | plasma membrane | 46.15 | 39.08 |
| AT3G16180.1 | Thale cress | plasma membrane | 45.11 | 36.72 |
| AT1G52190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 45.95 | 36.41 |
| PGSC0003DMT400075590 | Potato | plasma membrane | 42.83 | 35.76 |
| Solyc12g095810.1.1 | Tomato | plasma membrane | 42.41 | 31.05 |
| AT1G68570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 35.14 | 28.36 |
| AT1G27080.1 | Thale cress | cytosol, golgi, plasma membrane | 33.68 | 28.12 |
| AT5G28470.2 | Thale cress | plasma membrane | 31.18 | 26.74 |
| AT1G69860.1 | Thale cress | plasma membrane | 30.77 | 26.67 |
| AT1G18880.1 | Thale cress | cytosol, peroxisome, plasma membrane | 32.22 | 26.41 |
| AT3G45700.1 | Thale cress | plasma membrane | 29.94 | 26.28 |
| AT3G45680.1 | Thale cress | plasma membrane | 30.15 | 25.99 |
| AT1G69870.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.47 | 25.97 |
| AT3G45660.2 | Thale cress | plasma membrane | 31.18 | 25.95 |
| AT3G45720.1 | Thale cress | plasma membrane | 29.52 | 25.59 |
| AT3G45650.2 | Thale cress | plasma membrane | 30.56 | 25.17 |
| AT3G45710.1 | Thale cress | plasma membrane | 28.9 | 24.82 |
| Bra008953.1-P | Field mustard | plasma membrane | 77.13 | 24.0 |
| CDX69747 | Canola | plasma membrane | 76.92 | 23.93 |
| AT3G45690.1 | Thale cress | plasma membrane | 25.57 | 23.84 |
| AT5G62680.1 | Thale cress | golgi, peroxisome, vacuole | 30.15 | 23.54 |
| AT3G47960.1 | Thale cress | plasma membrane | 30.98 | 23.43 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.9 | EntrezGene:831029 | ProteinID:AED91696.1 | ArrayExpress:AT5G11570 | EnsemblPlantsGene:AT5G11570 |
| RefSeq:AT5G11570 | TAIR:AT5G11570 | RefSeq:AT5G11570-TAIR-G | EnsemblPlants:AT5G11570.1 | TAIR:AT5G11570.1 | Unigene:At.54821 |
| ProteinID:CAB87717.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:MFS_trans_sf | RefSeq:NP_196718.1 |
| PFAM:PF00854 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001170 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009032 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | InterPro:POT_fam | PANTHER:PTHR11654 |
| PANTHER:PTHR11654:SF197 | UniProt:Q9LYD5 | SUPFAM:SSF103473 | TMHMM:TMhelix | UniParc:UPI0000048B0F | SEG:seg |
Description
NPF1.3Protein NRT1/ PTR FAMILY 1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYD5]
Coordinates
chr5:-:3715931..3718276
Molecular Weight (calculated)
53388.7 Da
IEP (calculated)
8.275
GRAVY (calculated)
0.608
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEALLVGR TLLKRGIPTI PFILASQALE KLAYFGLVPN MILFLTVEYG MGTAEAANIL FLWSAATNFF PLVGAFIADS YTGRFPLIGF GSSISLTGMV
101: LLWLTTIIRP ECDKLTNVCQ PTTLLKSVLL YSFFALTAIG AGGVRSSCLA FAADQLQPNQ TSRVTTSSLE TLFNWYYFSV MVACFLSQSL LVFVQTTYGW
201: QIGFGVSVAA MALSVALFFA ASPYYVRFQK PTRNSRNPWK LCRVQQVEDL KSLINVIPIW STGIILSLVT ACQVSFIVLQ AKTMDRHTFI QGFEIPPGSY
301: GIFLVISFLL FLGLYDLVIV PLLSWALREP FRLGVMVRMW AGYVISVLCI SALAATEYAR RKTARDESGT KLSAMWLLPY MILGGIAEAL NTIAQNEFFY
401: SELPKTMSSV ATTLSSLNMA AASLISSWII TIVDVTTYGS WITENIDEGH LDYYYWLLVG LSLLNVLYFV WCKKSYGKCS I
101: LLWLTTIIRP ECDKLTNVCQ PTTLLKSVLL YSFFALTAIG AGGVRSSCLA FAADQLQPNQ TSRVTTSSLE TLFNWYYFSV MVACFLSQSL LVFVQTTYGW
201: QIGFGVSVAA MALSVALFFA ASPYYVRFQK PTRNSRNPWK LCRVQQVEDL KSLINVIPIW STGIILSLVT ACQVSFIVLQ AKTMDRHTFI QGFEIPPGSY
301: GIFLVISFLL FLGLYDLVIV PLLSWALREP FRLGVMVRMW AGYVISVLCI SALAATEYAR RKTARDESGT KLSAMWLLPY MILGGIAEAL NTIAQNEFFY
401: SELPKTMSSV ATTLSSLNMA AASLISSWII TIVDVTTYGS WITENIDEGH LDYYYWLLVG LSLLNVLYFV WCKKSYGKCS I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.