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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91207 Canola cytosol, endoplasmic reticulum, plasma membrane 50.54 80.75
AT5G11570.1 Thale cress plasma membrane 66.55 76.92
KRH62051 Soybean plasma membrane 44.6 43.66
CDY70561 Canola plasma membrane 41.01 41.91
PGSC0003DMT400075590 Potato plasma membrane 43.35 41.84
CDY28371 Canola plasma membrane 36.51 41.77
CDY69519 Canola plasma membrane 21.58 41.1
CDY20187 Canola plasma membrane 21.58 40.82
CDY69522 Canola plasma membrane 21.4 40.75
CDY30141 Canola plasma membrane 43.35 40.64
CDX97728 Canola plasma membrane 43.35 40.64
CDY51257 Canola plastid 35.43 40.53
Solyc12g095810.1.1 Tomato plasma membrane 42.99 36.38
CDX69747 Canola plasma membrane 94.24 33.89
CDY40280 Canola plasma membrane 32.91 32.22
CDY65728 Canola cytosol 11.51 32.16
CDY25813 Canola cytosol, peroxisome, plasma membrane 32.55 31.87
CDY11648 Canola plasma membrane 31.12 31.4
CDY28441 Canola cytosol, peroxisome, plasma membrane 32.01 31.34
CDY38766 Canola plasma membrane 30.76 31.03
CDY38595 Canola cytosol, peroxisome, plasma membrane 32.19 30.24
CDY53067 Canola cytosol, peroxisome, plasma membrane 31.83 29.8
CDY56086 Canola cytosol, peroxisome, plasma membrane 31.65 29.78
CDY69402 Canola plasma membrane 15.83 29.53
CDY07377 Canola cytosol, peroxisome, plasma membrane 31.47 29.36
CDY23545 Canola cytosol, peroxisome, plasma membrane 32.01 29.32
CDY04237 Canola cytosol, peroxisome, plasma membrane 31.12 29.08
CDY48389 Canola cytosol, peroxisome, plasma membrane 31.47 28.83
CDY11647 Canola plastid 32.01 28.76
CDY38767 Canola plastid 32.01 28.62
CDX81902 Canola cytosol, peroxisome, plasma membrane 30.4 28.55
CDX99152 Canola plasma membrane 28.6 28.55
CDY09846 Canola plasma membrane 21.94 28.44
CDX83801 Canola cytosol, peroxisome, plasma membrane 30.22 28.43
CDY45756 Canola plasma membrane 29.14 28.37
CDX86030 Canola plasma membrane 13.85 28.31
CDY21692 Canola plasma membrane 28.96 28.05
CDY18499 Canola plasma membrane 28.06 28.01
CDY26715 Canola plasma membrane 29.14 27.93
CDY05592 Canola plasma membrane 28.6 27.8
CDY52504 Canola plasma membrane 28.6 27.8
CDY54537 Canola cytosol, peroxisome, plasma membrane 30.76 27.67
CDX86198 Canola peroxisome 28.24 27.59
CDY16763 Canola peroxisome 28.42 27.53
CDY12696 Canola plasma membrane 25.54 27.47
CDY48147 Canola plasma membrane 27.16 27.4
CDX87266 Canola peroxisome 28.24 27.4
CDX81495 Canola plasma membrane 25.54 27.36
CDY52480 Canola plasma membrane 22.66 27.33
CDX84344 Canola plasma membrane 29.32 27.08
CDY30731 Canola plasma membrane 29.14 27.05
CDY36913 Canola cytosol, peroxisome, plasma membrane 29.86 26.99
CDY00315 Canola plasma membrane 29.68 26.96
CDX96690 Canola plasma membrane 29.32 26.85
CDY45754 Canola plasma membrane 28.96 26.74
CDY51783 Canola cytosol, peroxisome, plasma membrane 28.96 26.7
CDX99151 Canola plasma membrane 26.62 26.67
CDX83027 Canola cytosol, peroxisome, plasma membrane 28.78 26.58
CDX68450 Canola cytosol, peroxisome, plasma membrane 29.32 26.5
CDY69433 Canola golgi, peroxisome, plastid 29.5 25.87
CDX86031 Canola plasma membrane 7.19 25.81
CDY21805 Canola cytosol, peroxisome, plasma membrane 28.78 25.76
CDY16764 Canola cytosol, mitochondrion, plasma membrane, plastid 26.62 24.96
CDX96007 Canola cytosol, peroxisome, plasma membrane 28.42 22.83
CDY68532 Canola cytosol 1.08 1.12
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078JKE4UniProt:A0A078JKE4EnsemblPlants:CDY67993ProteinID:CDY67993
ProteinID:CDY67993.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00068391001InterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF197SUPFAM:SSF103473TMHMM:TMhelix
UniParc:UPI0004EED2FBSEG:seg::::
Description
BnaCnng57240DBnaCnng57240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKE4]
Coordinates
chrLK036735:-:2660..5689
Molecular Weight (calculated)
61616.2 Da
IEP (calculated)
7.235
GRAVY (calculated)
0.457
Length
556 amino acids
Sequence
(BLAST)
001: MDQEALLVGK ATDQHPEKRT VSTISCILAS QALEKLAYYG LVPNMILYLT VEYGMGTTEA ANILFLWSAA TNFFPLICAF IADSYTGRFP LIGFGSSTSL
101: LGMLSLWLAA MIQPKCDKSI DVCQPITPFQ LFLLYSFFTL TSIGAGGVRS SCLAFAADQL QLNNTTRIST SALETLFNWY YFSVMLAYFL SESLLVFVQT
201: KYGWQIGFGV SLASMALSVA LFFAASPFYV KFKCEHGLVS GLFQVLVAAF RNQHVDLSSE EYIISYHQET GSSFSIPSQK LRYLNKACAT SNPRQDQTLT
301: GNSQNPWKLC TVQQVEDFKS LVNVLPIWST GIILSLVTAC QASFIVLQAK AMDRRTFIKG FEIPPGCYGV FMIISFVLFL VIYDLVVIPS VSWALKKPFR
401: LGVMVRMGAG IAISVLCIST LAIVEYVRRK RAREEGGTLL SAMWLLPYML LGGISEALIS IAQNEFFYSE LPKSMSSVAT TLSGLNMAAA SLVSSWIVTA
501: VDTATCRTWI IEDINEGHLD YYYWLMTAFS LLNVVYFVWC SKAYGKCKSD TDNSIN
Best Arabidopsis Sequence Match ( AT5G11570.1 )
(BLAST)
001: MDQEALLVGR TLLKRGIPTI PFILASQALE KLAYFGLVPN MILFLTVEYG MGTAEAANIL FLWSAATNFF PLVGAFIADS YTGRFPLIGF GSSISLTGMV
101: LLWLTTIIRP ECDKLTNVCQ PTTLLKSVLL YSFFALTAIG AGGVRSSCLA FAADQLQPNQ TSRVTTSSLE TLFNWYYFSV MVACFLSQSL LVFVQTTYGW
201: QIGFGVSVAA MALSVALFFA ASPYYVRFQK PTRNSRNPWK LCRVQQVEDL KSLINVIPIW STGIILSLVT ACQVSFIVLQ AKTMDRHTFI QGFEIPPGSY
301: GIFLVISFLL FLGLYDLVIV PLLSWALREP FRLGVMVRMW AGYVISVLCI SALAATEYAR RKTARDESGT KLSAMWLLPY MILGGIAEAL NTIAQNEFFY
401: SELPKTMSSV ATTLSSLNMA AASLISSWII TIVDVTTYGS WITENIDEGH LDYYYWLLVG LSLLNVLYFV WCKKSYGKCS I
Arabidopsis Description
NPF1.3Protein NRT1/ PTR FAMILY 1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYD5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.