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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20187 Canola plasma membrane 52.21 96.6
CDY28371 Canola plasma membrane 79.78 89.3
CDY51257 Canola plastid 77.39 86.63
CDY30141 Canola plasma membrane 92.65 84.99
CDX97728 Canola plasma membrane 92.1 84.49
AT3G16180.1 Thale cress plasma membrane 87.87 80.88
CDY69519 Canola plasma membrane 42.28 78.77
CDY69522 Canola plasma membrane 42.28 78.77
VIT_09s0002g04130.t01 Wine grape plasma membrane 63.42 55.47
PGSC0003DMT400006545 Potato plasma membrane 44.85 52.25
Solyc03g120560.2.1 Tomato plasma membrane 54.41 49.09
PGSC0003DMT400068025 Potato plasma membrane 53.49 48.58
Solyc03g120550.2.1 Tomato plasma membrane 55.88 47.5
Solyc12g044310.1.1 Tomato plasma membrane 54.6 47.22
CDY65728 Canola cytosol 15.44 42.21
CDY67993 Canola plasma membrane 41.91 41.01
CDX91207 Canola cytosol, endoplasmic reticulum, plasma membrane 25.37 39.66
CDY69402 Canola plasma membrane 21.51 39.26
CDY38595 Canola cytosol, peroxisome, plasma membrane 37.5 34.46
CDY09846 Canola plasma membrane 27.02 34.27
CDY56086 Canola cytosol, peroxisome, plasma membrane 36.95 34.01
CDY40280 Canola plasma membrane 35.29 33.8
CDY07377 Canola cytosol, peroxisome, plasma membrane 36.95 33.72
CDY28441 Canola cytosol, peroxisome, plasma membrane 35.11 33.63
CDY53067 Canola cytosol, peroxisome, plasma membrane 36.58 33.5
CDY04237 Canola cytosol, peroxisome, plasma membrane 36.58 33.45
CDY25813 Canola cytosol, peroxisome, plasma membrane 34.74 33.27
CDY23545 Canola cytosol, peroxisome, plasma membrane 36.95 33.11
CDY38767 Canola plastid 37.32 32.64
CDY11647 Canola plastid 37.13 32.63
CDY48389 Canola cytosol, peroxisome, plasma membrane 36.4 32.62
CDY52504 Canola plasma membrane 34.01 32.34
CDY05592 Canola plasma membrane 33.82 32.17
CDX86198 Canola peroxisome 33.09 31.63
CDX86030 Canola plasma membrane 15.81 31.62
CDY54537 Canola cytosol, peroxisome, plasma membrane 35.48 31.23
CDY26715 Canola plasma membrane 33.09 31.03
CDY52480 Canola plasma membrane 26.1 30.8
CDY12696 Canola plasma membrane 29.04 30.56
CDX83801 Canola cytosol, peroxisome, plasma membrane 33.09 30.46
CDX81495 Canola plasma membrane 29.04 30.44
CDY38766 Canola plasma membrane 30.7 30.31
CDY11648 Canola plasma membrane 30.7 30.31
CDX81902 Canola cytosol, peroxisome, plasma membrane 32.9 30.24
CDY21692 Canola plasma membrane 31.43 29.79
CDY45756 Canola plasma membrane 31.25 29.77
CDY30731 Canola plasma membrane 32.35 29.38
CDY00315 Canola plasma membrane 32.72 29.09
CDX68450 Canola cytosol, peroxisome, plasma membrane 32.72 28.94
CDY36913 Canola cytosol, peroxisome, plasma membrane 32.72 28.94
CDX84344 Canola plasma membrane 31.99 28.9
CDY51783 Canola cytosol, peroxisome, plasma membrane 31.99 28.86
CDX99152 Canola plasma membrane 29.41 28.73
CDX96690 Canola plasma membrane 31.99 28.67
CDY45754 Canola plasma membrane 31.62 28.57
CDX83027 Canola cytosol, peroxisome, plasma membrane 31.62 28.57
CDY18499 Canola plasma membrane 29.04 28.37
CDX87266 Canola peroxisome 29.78 28.27
CDY69433 Canola golgi, peroxisome, plastid 32.9 28.23
CDY16763 Canola peroxisome 29.78 28.22
CDY21805 Canola cytosol, peroxisome, plasma membrane 32.17 28.18
CDX99151 Canola plasma membrane 28.12 27.57
CDY48147 Canola plasma membrane 27.76 27.4
CDY16764 Canola cytosol, mitochondrion, plasma membrane, plastid 27.39 25.13
CDX96007 Canola cytosol, peroxisome, plasma membrane 31.07 24.42
CDX86031 Canola plasma membrane 5.88 20.65
CDX69747 Canola plasma membrane 42.46 14.94
CDY68532 Canola cytosol 0.37 0.37
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078JYI1UniProt:A0A078JYI1EnsemblPlants:CDY70561ProteinID:CDY70561
ProteinID:CDY70561.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00004383001InterPro:IPR020846
InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF157
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EDE0A0SEG:seg::
Description
BnaCnng68850DBnaCnng68850D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYI1]
Coordinates
chrLK042522:-:2..3150
Molecular Weight (calculated)
59862.4 Da
IEP (calculated)
9.331
GRAVY (calculated)
0.313
Length
544 amino acids
Sequence
(BLAST)
001: MENPPDQTES KEMMLQPRIT RPKGGLLTMP FIIANEGFEK VASYGLLQNM ILYLMSDYGL GLVKGQNVLF MWVAATNFMP LVGAFLSDSY LGRFLTISIA
101: SLSSFLGMMV LWLTAMLPQV KPSPCVASTV TKCSSTAATS SQLALLYFAF ALISIGSGGI RPCSLAFGAD QLDNKENPKN ERVLESFFGW YYASSSVAVL
201: IAFTVIVYIQ DHLGWRIGFG VPAILMLLAG ILFVLASPLY VKRNATKSLF TGLAQVAVAA YVNRKLMLPG QNDSYGCYYH LNDSELKAPS DKLRFLNKAC
301: VTSNQEEDIG ADGLALNPWR LCTTDQVEEL KALVKVIPVW STGIMMSINV SQNSFQLLQA NSMDRRLSDH STFKIPPGSF GMFTIIALIA WVVLYDRAIL
401: PLASKIRGKP VRINVKIRMG LGLFISFLAM AVSATVEHYR RRTAISQGLA NNATATFPKS MSSIAAALFG LGMAVANILA SVILNVVKNS SKKGGESWIE
501: DNINKGHYDY YYWVLAILSF VNVIYYIVCS WSYGPTMDQL RNDK
Best Arabidopsis Sequence Match ( AT3G16180.1 )
(BLAST)
001: MENPPDQTES KETLQQPITR RRTKGGLLTM PFIIANEGFE KVASYGLLQN MILYLMSDYR LGLVKGQTVL FMWVAATNFM PLVGAFLSDS YLGRFLTIVI
101: ASLSSLLGMV VLWLTAMLPQ VKPSPCVATA GTNCSSATSS QLALLYTAFA LISIGSGGIR PCSLAFGADQ LDNKENPKNE RVLESFFGWY YASSSVAVLI
201: AFTVIVYIQD HLGWKIGFGI PAILMLLAGF LFVFASPLYV KRDVSKSLFT GLAQVVAAAY VKRNLTLPDH HDSRDCYYRL KDSELKAPSD KLRFLNKACA
301: ISNRDEDLGS DGLALNQWRL CTTDQVEKLK ALVKVIPVWS TGIMMSINVS QNSFQLLQAK SMDRRLSSNS TFQIPAGSFG MFTIIALISW VVLYDRAILP
401: LASKIRGRPV RVNVKIRMGL GLFISFLAMA VSATVEHYRR KTAISQGLAN DANSTVSISA MWLVPQYVLH GLAEALTGIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVANI LASVILNAVK NSSKQGNVSW IEDNINKGHY DYYYWVLAIL SFVNVIYYVV CSWSYGPTVD QVRNDKVNGM RKEEEEVIKL N
Arabidopsis Description
NPF1.1Protein NRT1/ PTR FAMILY 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.