Factsheet for AT1G52190.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018952.1-P	Field mustard	plasma membrane	92.42	92.57
CDY69519	Canola	plasma membrane	43.49	90.41
CDY69522	Canola	plasma membrane	43.33	90.07
AT3G16180.1	Thale cress	plasma membrane	76.11	78.17
VIT_09s0002g04130.t01	Wine grape	plasma membrane	62.77	61.25
PGSC0003DMT400006545	Potato	plasma membrane	43.66	56.75
KRH44330	Soybean	plasma membrane	54.53	56.39
KRH09892	Soybean	cytosol, peroxisome, plasma membrane	54.04	54.58
KRH09893	Soybean	cytosol, peroxisome, plasma membrane	55.35	54.55
KRH47259	Soybean	plasma membrane	54.53	54.17
KRH47260	Soybean	plasma membrane	53.71	53.8
KRH44331	Soybean	cytosol, peroxisome, plasma membrane	53.71	53.71
PGSC0003DMT400068025	Potato	plasma membrane	52.39	53.09
Solyc03g120560.2.1	Tomato	plasma membrane	52.55	52.9
Solyc03g120550.2.1	Tomato	plasma membrane	53.71	50.94
Solyc12g044310.1.1	Tomato	plasma membrane	52.22	50.4
AT5G11570.1	Thale cress	plasma membrane	36.41	45.95
AT1G68570.1	Thale cress	cytosol, peroxisome, plasma membrane	35.42	36.07
AT5G28470.2	Thale cress	plasma membrane	32.13	34.76
AT1G27080.1	Thale cress	cytosol, golgi, plasma membrane	32.45	34.2
AT1G18880.1	Thale cress	cytosol, peroxisome, plasma membrane	32.78	33.9
AT1G69870.1	Thale cress	cytosol, nucleus, plasma membrane	33.11	32.42
AT3G45720.1	Thale cress	plasma membrane	29.16	31.89
AT1G69860.1	Thale cress	plasma membrane	29.16	31.89
AT3G45650.2	Thale cress	plasma membrane	30.31	31.51
AT3G45680.1	Thale cress	plasma membrane	28.83	31.36
AT3G45700.1	Thale cress	plasma membrane	28.17	31.2
AT5G62680.1	Thale cress	golgi, peroxisome, vacuole	31.47	31.01
AT3G45660.2	Thale cress	plasma membrane	29.32	30.8
AT3G45710.1	Thale cress	plasma membrane	28.17	30.54
AT3G45690.1	Thale cress	plasma membrane	25.86	30.43
AT3G47960.1	Thale cress	plasma membrane	31.14	29.72

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	EntrezGene:841649	ProteinID:AAF29404.1	ProteinID:AEE32766.1	ArrayExpress:AT1G52190
EnsemblPlantsGene:AT1G52190	RefSeq:AT1G52190	TAIR:AT1G52190	RefSeq:AT1G52190-TAIR-G	EnsemblPlants:AT1G52190.1	TAIR:AT1G52190.1
EMBL:AY058204	EMBL:AY084631	EMBL:AY098981	Unigene:At.25542	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0015706
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	GO:GO:0080054	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_trans_sf	RefSeq:NP_175630.1	PFAM:PF00854	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0005417	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PO:PO:0025413
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF157	UniProt:Q9M817	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI00000A9997	SEG:seg	:	:	:	:

Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]

Coordinates

chr1:+:19434480..19439031

Molecular Weight (calculated)

66907.6 Da

IEP (calculated)

9.095

GRAVY (calculated)

0.241

Length

607 amino acids

Sequence
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.