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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400065200 Potato cytosol, peroxisome, plasma membrane 97.65 97.82
KRH56967 Soybean peroxisome 56.71 56.62
AT5G28470.2 Thale cress plasma membrane 51.01 54.19
CDY05592 Canola plasma membrane 51.68 53.85
CDY52504 Canola plasma membrane 51.68 53.85
Bra020609.1-P Field mustard plasma membrane 51.68 53.85
CDX86198 Canola peroxisome 50.84 53.25
Bra009996.1-P Field mustard peroxisome 50.84 53.25
CDY52480 Canola plasma membrane 41.11 53.15
Solyc03g113430.2.1 Tomato plasma membrane 36.41 37.09
Solyc05g006920.2.1 Tomato cytosol, peroxisome, plasma membrane 37.25 36.57
Solyc06g071570.2.1 Tomato plasma membrane 35.07 36.16
Solyc03g113420.2.1 Tomato plasma membrane 34.56 35.09
Solyc06g071090.1.1 Tomato endoplasmic reticulum, plasma membrane 17.28 33.99
Solyc05g009500.2.1 Tomato plasma membrane 32.55 33.86
Solyc04g005070.2.1 Tomato plasma membrane 30.87 32.11
Solyc05g005980.2.1 Tomato plasma membrane 30.7 31.61
Solyc05g005950.2.1 Tomato plasma membrane 30.54 31.6
Solyc12g007220.1.1 Tomato cytosol, peroxisome, plasma membrane 31.04 31.57
Solyc05g005970.2.1 Tomato plasma membrane 30.54 31.38
Solyc05g005920.2.1 Tomato plasma membrane 30.54 31.22
Solyc05g005940.2.1 Tomato plasma membrane 29.87 30.74
Solyc03g120560.2.1 Tomato plasma membrane 31.04 30.68
Solyc05g005960.2.1 Tomato plasma membrane 29.03 30.03
Solyc08g066940.2.1 Tomato plasma membrane 25.84 30.02
Solyc11g072570.1.1 Tomato plasma membrane 28.02 29.87
Solyc03g120550.2.1 Tomato plasma membrane 31.88 29.69
Solyc05g005990.2.1 Tomato plasma membrane 22.65 29.41
Solyc05g006010.2.1 Tomato plasma membrane 28.69 29.23
Solyc06g075440.1.1 Tomato plasma membrane 25.84 29.0
Solyc05g006000.2.1 Tomato plasma membrane 28.36 28.84
Solyc11g072560.1.1 Tomato plasma membrane 24.83 28.79
Solyc06g075500.2.1 Tomato plasma membrane 26.01 28.55
Solyc12g044310.1.1 Tomato plasma membrane 29.87 28.3
Solyc06g075490.1.1 Tomato plasma membrane 25.67 27.87
Solyc06g005070.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid 14.6 27.62
Solyc06g075450.1.1 Tomato extracellular, plasma membrane, vacuole 24.66 26.92
Solyc11g072580.1.1 Tomato plasma membrane 24.5 26.59
Solyc06g075480.2.1 Tomato plasma membrane 24.66 26.53
Solyc12g095810.1.1 Tomato plasma membrane 28.19 25.57
Solyc05g005910.2.1 Tomato plasma membrane 31.21 24.64
Protein Annotations
EnsemblPlants:Solyc03g113440.2.1EnsemblPlantsGene:Solyc03g113440.2GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:IPR020846
InterPro:MFS_domInterPro:MFS_trans_sfInterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF181PFAM:PF00854
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0002767C1BUniProt:K4BKJ6MapMan:24.2.2.9:
Description
No Description!
Coordinates
chr3:-:63586871..63589273
Molecular Weight (calculated)
66568.7 Da
IEP (calculated)
8.306
GRAVY (calculated)
0.303
Length
596 amino acids
Sequence
(BLAST)
001: MADEIINASH SSSEEEVEQN IAPKCFTRKK GGWTAIAFIL GNESFEKLAS VSLISNMTTY LRTKYNMGGV FLVNVVSIWS GCSNITPIAG AFLADAHLGR
101: FLTLLFGSLA SFMGMGMVTL TAGIDELRPP HCQGNARCED PQKWQLGYLF VGLGFMAIGS GGIRACNIAF GADQFDTNTE KGRSQLKSFF NWWYFSFTIA
201: LIIALTVVIY IQTNISWFIG FLIPTCCLAL SIMIFLMGRN SYIRLKPQGC VFIDMAKVIN AACRKRHIHD LPTASSLYDP ETRESENELS VLRHTDRFKF
301: LDKAAVIVDP NSELNTEGVA KDSWRLCNVE QVERLKCVVG ILPVWVAGIT CFITMEQMNT FGVLQVIQSN TKVGNFMIPP GWMGLASMIA LAIWIFIYEC
401: VYVPNASKIS KKEARLSLQI RIKIGIIMAI LCLLVAALVE TRRRDLALKQ GTFLSPLGIA YFLPQFILSG LTEAFAAVSV MEFLNNQVPE TMRSVAGAIF
501: FLSLSIASYL NTLIVNLVEI LSRLHGGKRW LGGHDLNENK LERFYLLIAG LGILNFIYFH FFASRYIQSY EESKRRKTVL EDRVDAGYVD LPEKKP
Best Arabidopsis Sequence Match ( AT5G28470.2 )
(BLAST)
001: MDVESSSPSS HALIKKEKGG WRAIKYIIAN ESFEKLASMS LIGNLSVYLM TKYNLGGVFL VNVINIWFGS CNILTLAGAF VSDAYLGRFW TLLLGSIASF
101: IGMGIFALTA ALPSLRPDAC IDPSNCSNQP AKWQLGVLFS GLGLLAIGAG GVRPCNIAFG ADQFDTSTKK GKAHLETFFN WWYFSFTVAL VIALTGVVYI
201: QTNISWVIGF VIPTACLALS ITTFVIGQHT YICAKAEGSV FADIVKVVTA ACKKRKVKPG SDITFYIGPS NDGSPTTLVR DKHRLRFFDK ASIVTNPNEL
301: NEDGNAKYKW RLCSVQQVKN LKCVTAILPV WVTGIACFIL TDQQNIYGIL QAMQMDKTFG PHNFQVPAGW MNLVSMITLA IWISLYECVI IPIVKQITGR
401: KKRLTLKHRI EIGIVMGIIC MIVAGFQEKK RRASALKNGS FVSPVSIVML LPQFALAGLT EAFSAVALME FLTVRMPEHM RAVAGAIFFL SSSIASYICT
501: LLINVIDAVT RKEGKSWLGD KDLNKNRLEN YFFIIAGIQV ANLLYFRLFA SRYATENKKG H
Arabidopsis Description
Major facilitator superfamily protein [Source:TAIR;Acc:AT5G28470]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.