Factsheet for Solyc05g005990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040284	Potato	plasma membrane	93.25	73.16
Solyc05g006010.2.1	Tomato	plasma membrane	86.49	67.86
Solyc05g006000.2.1	Tomato	plasma membrane	86.27	67.58
Solyc04g005070.2.1	Tomato	plasma membrane	74.73	59.86
Solyc05g005920.2.1	Tomato	plasma membrane	58.82	46.31
Solyc05g005980.2.1	Tomato	plasma membrane	57.08	45.25
Solyc05g005970.2.1	Tomato	plasma membrane	55.99	44.31
Solyc05g005940.2.1	Tomato	plasma membrane	54.47	43.18
Solyc05g005950.2.1	Tomato	plasma membrane	54.03	43.06
Solyc05g005960.2.1	Tomato	plasma membrane	53.81	42.88
VIT_11s0016g03600.t01	Wine grape	plasma membrane	51.85	40.82
Solyc08g066940.2.1	Tomato	plasma membrane	44.01	39.38
KRH04819	Soybean	plasma membrane	48.8	38.82
KRH16178	Soybean	plasma membrane	47.49	37.27
Solyc05g005910.2.1	Tomato	plasma membrane	56.64	34.44
Solyc12g007220.1.1	Tomato	cytosol, peroxisome, plasma membrane	42.7	33.45
KRH04899	Soybean	cytosol, peroxisome, plasma membrane	39.65	33.09
Solyc12g044310.1.1	Tomato	plasma membrane	41.39	30.21
Solyc03g120560.2.1	Tomato	plasma membrane	38.13	29.02
Solyc05g009500.2.1	Tomato	plasma membrane	35.51	28.45
Solyc12g095810.1.1	Tomato	plasma membrane	39.87	27.85
Solyc03g120550.2.1	Tomato	plasma membrane	37.91	27.19
Solyc03g113430.2.1	Tomato	plasma membrane	32.9	25.81
Solyc06g075500.2.1	Tomato	plasma membrane	30.5	25.78
Solyc06g075450.1.1	Tomato	extracellular, plasma membrane, vacuole	30.5	25.64
Solyc03g113420.2.1	Tomato	plasma membrane	32.24	25.21
Solyc05g006920.2.1	Tomato	cytosol, peroxisome, plasma membrane	33.33	25.21
Solyc06g075480.2.1	Tomato	plasma membrane	29.85	24.73
Solyc06g071570.2.1	Tomato	plasma membrane	30.5	24.22
Solyc06g075490.1.1	Tomato	plasma membrane	28.32	23.68
Solyc03g113440.2.1	Tomato	plasma membrane	29.41	22.65
Solyc11g072580.1.1	Tomato	plasma membrane	26.58	22.22
Solyc06g075440.1.1	Tomato	plasma membrane	25.05	21.66
Solyc11g072570.1.1	Tomato	plasma membrane	26.36	21.65
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	13.73	20.79
Solyc11g072560.1.1	Tomato	plasma membrane	23.09	20.62
VIT_04s0008g03580.t01	Wine grape	plasma membrane	48.8	18.97
Solyc06g005070.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	10.02	14.6

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:K4BWC6	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	PANTHER:PTHR11654
PANTHER:PTHR11654:SF150	SUPFAM:SSF103473	EnsemblPlantsGene:Solyc05g005990.2	EnsemblPlants:Solyc05g005990.2.1	TMHMM:TMhelix	UniParc:UPI00027671C1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:734225..736907

Molecular Weight (calculated)

50787.2 Da

IEP (calculated)

5.823

GRAVY (calculated)

0.280

Length

459 amino acids

Sequence
(BLAST)

001: MGNKPEEEEF LLNHSQNSTK GGVKTIPFII VNESCERVAS FGLQPNMILY ITKFYNMDAA RASVLLNLWS ALSNGLAIFG AFISDSYIGR FRAIAIGTIS
101: SLIGMILLWL TTIFPQLRPL PCGQYQLDCN AATSTQLAVI LCSFGLIAIG AGFVRPCSVA FGADQLENKR NPDNERVMDT YFNWFYASVG ISISVAITVI
201: VYIQVQFGWQ VGFGVPALLM VLSVSVYLIG SPLYIKPKSE GSLFTGLFQV AVAAFRKRHI NVQLNYNDDC YYKAPESKLL EPSTDFRCLN RACIIEDPHV
301: ELKPDGKAIN AGFEDDPNAV LNMSSMWFVP QLALYGVAEA LNVVGQIEFI YSLFPKTMSS FAAALYTFGL ALAGLINSLL VSVVDSTTSA GGNTSWLATN
401: INRGHLDYYC WLITFLCVIN FLYFLAVCRF TDQHHHDGRS SLFPDAEEEH SENRRFHGA

Best Arabidopsis Sequence Match ( AT1G52190.1 )
(BLAST)

001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN

Arabidopsis Description

NPF1.2Protein NRT1/ PTR FAMILY 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M817]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.