Factsheet for TraesCS4D01G026800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G283900.1	Wheat	golgi, unclear	99.5	99.33
TraesCS4B01G029600.1	Wheat	cytosol, peroxisome, plasma membrane	98.32	98.49
HORVU4Hr1G004460.1	Barley	cytosol, peroxisome, plasma membrane	97.15	96.34
EER91066	Sorghum	cytosol, peroxisome, plasma membrane	87.25	87.69
Os03t0687000-02	Rice	plasma membrane	86.24	87.56
Zm00001d013529_P002	Maize	plasma membrane	86.58	87.31
Zm00001d033528_P003	Maize	cytosol, peroxisome, plasma membrane	85.91	86.93
GSMUA_Achr4P22320_001	Banana	plasma membrane	49.83	58.7
PGSC0003DMT400065197	Potato	mitochondrion	55.2	56.24
VIT_14s0066g02590.t01	Wine grape	plasma membrane	54.19	55.21
Solyc03g113430.2.1	Tomato	plasma membrane	54.03	55.04
TraesCS5D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	55.37	54.01
TraesCS5D01G045300.1	Wheat	cytosol, peroxisome, plasma membrane	55.37	53.75
TraesCS2D01G044200.1	Wheat	plasma membrane	53.86	53.59
TraesCS2D01G044000.1	Wheat	plasma membrane	53.52	52.99
Solyc06g071570.2.1	Tomato	plasma membrane	51.01	52.6
PGSC0003DMT400069660	Potato	plasma membrane	50.67	52.25
KRH03408	Soybean	cytosol, peroxisome, plasma membrane	50.0	50.34
CDY45756	Canola	plasma membrane	48.15	50.26
CDY09846	Canola	plasma membrane	36.07	50.12
Solyc03g113420.2.1	Tomato	plasma membrane	49.33	50.09
KRH56968	Soybean	plasma membrane	50.0	50.0
KRH56970	Soybean	cytosol, peroxisome, plasma membrane	50.0	49.92
PGSC0003DMT400065196	Potato	plasma membrane	49.33	49.75
Bra035886.1-P	Field mustard	plasma membrane	41.44	49.7
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	25.17	49.51
CDY26715	Canola	plasma membrane	48.15	49.48
Bra025695.1-P	Field mustard	plasma membrane	48.15	49.48
CDY00315	Canola	plasma membrane	50.5	49.18
Bra029248.1-P	Field mustard	plasma membrane	50.5	49.18
CDX84344	Canola	plasma membrane	49.66	49.17
CDY30731	Canola	plasma membrane	49.33	49.08
Bra010111.1-P	Field mustard	plasma membrane	50.34	49.02
CDY45754	Canola	plasma membrane	49.33	48.84
CDX81902	Canola	cytosol, peroxisome, plasma membrane	48.32	48.65
CDX83801	Canola	cytosol, peroxisome, plasma membrane	48.15	48.56
AT5G62680.1	Thale cress	golgi, peroxisome, vacuole	50.17	48.54
AT1G18880.1	Thale cress	cytosol, peroxisome, plasma membrane	47.48	48.21
Bra031054.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.82	48.14
CDY21692	Canola	plasma membrane	46.31	48.08
Bra019521.1-P	Field mustard	plasma membrane	48.99	47.79
KRH03412	Soybean	plasma membrane	46.81	47.61
Bra035885.1-P	Field mustard	peroxisome	44.8	47.34
Bra018096.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.83	47.32
CDY36913	Canola	cytosol, peroxisome, plasma membrane	48.83	47.32
CDY51783	Canola	cytosol, peroxisome, plasma membrane	47.82	47.26
CDY16763	Canola	peroxisome	45.3	47.04
KRH56969	Soybean	plasma membrane	48.15	46.97
CDX87266	Canola	peroxisome	45.13	46.95
KRH03409	Soybean	plasma membrane	48.15	46.9
CDY21805	Canola	cytosol, peroxisome, plasma membrane	48.32	46.38
CDX68450	Canola	cytosol, peroxisome, plasma membrane	47.82	46.34
CDX96690	Canola	plasma membrane	46.81	45.96
CDY69433	Canola	golgi, peroxisome, plastid	48.83	45.9
Bra033782.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.32	45.85
AT3G47960.1	Thale cress	plasma membrane	48.83	45.75
CDX83027	Canola	cytosol, peroxisome, plasma membrane	45.97	45.51
TraesCS3D01G414400.1	Wheat	plasma membrane	42.62	42.12
CDY16764	Canola	cytosol, mitochondrion, plasma membrane, plastid	40.44	40.64
TraesCS3D01G414300.1	Wheat	plasma membrane	41.28	40.53
TraesCS7D01G209200.1	Wheat	cytosol, nucleus, peroxisome	38.09	36.73
TraesCS3D01G297400.1	Wheat	plasma membrane	35.57	36.3
TraesCS1D01G257200.1	Wheat	cytosol, nucleus, plasma membrane	35.74	35.86
TraesCS1D01G257100.1	Wheat	plasma membrane	35.23	34.83
TraesCS1D01G256700.1	Wheat	plasma membrane	35.4	34.7
TraesCS3D01G297600.1	Wheat	plasma membrane	33.72	34.18
TraesCS7D01G119800.1	Wheat	plasma membrane	31.88	34.17
TraesCS7D01G049300.1	Wheat	plasma membrane	31.21	33.76
TraesCS7D01G120200.1	Wheat	cytosol, plasma membrane, vacuole	32.05	33.63
TraesCS7D01G049400.1	Wheat	plasma membrane	30.2	32.14
TraesCS7D01G119900.1	Wheat	plasma membrane	30.37	31.87
TraesCS5D01G158500.1	Wheat	plasma membrane	29.87	31.12
Bra016534.1-P	Field mustard	plastid	47.65	27.52
VIT_17s0000g05550.t01	Wine grape	plasma membrane	53.19	18.49

Protein Annotations

EnsemblPlants:TraesCS4D01G026800.1	EnsemblPlantsGene:TraesCS4D01G026800	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	InterPro:MFS_dom
InterPro:MFS_trans_sf	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF129	PFAM:PF00854	SEG:seg
SUPFAM:SSF103473	TIGR:cd06174	TMHMM:TMhelix	MapMan:24.2.2.9	:	:

Description

No Description!

Coordinates

chr4D:-:11862535..11867540

Molecular Weight (calculated)

64921.8 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.261

Length

596 amino acids

Sequence
(BLAST)

001: MRGGGGREDE EAGQKLKSMD SGKGMDGGGG SSGDDDSPHP PRPALKYHGW KAMPFIIGNE TFEKLGTLGT SANLLVYLTQ VFHMRSVDAA TLLNGLNGTT
101: SLAPIVGAFL SDAYLGRYLA LAIASVASLI GMFFLTLTAG ADSLHPADCG VGEVCEKASS YQLAVLFIAF AFLVIGSAGI RPCSMPFGAD QFDPHTESGK
201: RGINSFFNWY YFTFTSAMLV SATVIIYVQS NVNWAIGLGI PTALMFLACV LFFMGTRLYV RVVPEGSPFT TIVQVFAAAF AKRSLKQAKD PKQDLFDPPH
301: TSAIVTKLAH TDQFRCLDKA AMVASPEEVR SGGAAAADPW RLCTVQQVEE VKCLIRIVPV WSTGIIYYVA VVQQSTYVVF SALQSDRRLG SSFHVPAASF
401: TVFAMLAQTL WIPIYDRLLV PRLRKVTGKD EGFTLLQRQG IGIALSTVAM IISAVVEDRR RDIALNQPTI GTTQTGGGIS AMSSFWMVPQ LMILGLSEAF
501: NLISQIEFYY KEIPEHMRSV AGALAFCNLA LGNYLSGFLT TIVHRTTGGG QNWLAQDLNK GRLDLFYWMI AGIGVFNFVY FMICARWYRF KGTRDA

Best Arabidopsis Sequence Match ( AT3G47960.1 )
(BLAST)

001: MKSRVILNHR DRRDKNHNNN NTNHYTQVDT MERKPLEVEP STTTTNTDVV DSFEEEQRKI VYRGWKVMPF IIGNETFEKL GIIGTLSNLL VYLTSVFNLK
101: SYTAATIINA FSGTINFGTF IAAFLCDTYF GRYKTLSVAV IACFLGSFVI LLTAAIPSLH PVACGNKISC EGPSVGQILF LLMGLGFLVV GAGGIRPCNL
201: AFGADQFNPK SESGKKGINS FFNWYFFTFT FAQIISLTAV VYIQSNVSWT IGLIIPVALM FLACVIFFAG DRLYVKVKAS GSPLAGIARV IAAAIKKRGL
301: KPVKQPWVNL YNHIPSNYAN TTLKYTDQFR FLDKAAIMTP EEKLNSDGTA SDPWKLCTLQ QVEEVKCIVR VIPIWFASTI YYLAITIQMT YPVFQALQSD
401: RRLGSGGFRI PAATYVVFLM TGMTVFIIFY DRVLVPSLRR VTGLETGISL LQRIGAGFTF AIMSLLVSGF IEERRRNFAL TKPTLGMAPR TGEISSMSAL
501: WLIPQLTLAG IAEAFAAIGQ MEFYYKQFPE NMKSFAGSIF YVGAGVSSYL ASFLISTVHR TTAHSPSGNW LAEDLNKAKL DYFYFMLTGL MVVNMAYFLL
601: MARWYRYKGG NDEDITEIET NEEETKQQQL QDKNSV

Arabidopsis Description

NPF2.10GTR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6P7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.