Factsheet for TraesCS4A01G283900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G026800.1	Wheat	golgi, unclear	99.33	99.5
TraesCS4B01G029600.1	Wheat	cytosol, peroxisome, plasma membrane	98.33	98.66
HORVU4Hr1G004460.1	Barley	cytosol, peroxisome, plasma membrane	97.49	96.84
Os03t0687000-02	Rice	plasma membrane	85.93	87.39
EER91066	Sorghum	cytosol, peroxisome, plasma membrane	86.77	87.35
Zm00001d013529_P002	Maize	plasma membrane	86.1	86.97
Zm00001d033528_P003	Maize	cytosol, peroxisome, plasma membrane	85.43	86.59
GSMUA_Achr4P22320_001	Banana	plasma membrane	49.58	58.5
PGSC0003DMT400065197	Potato	mitochondrion	54.94	56.07
VIT_14s0066g02590.t01	Wine grape	plasma membrane	53.94	55.04
Solyc03g113430.2.1	Tomato	plasma membrane	53.77	54.87
TraesCS5A01G037900.1	Wheat	cytosol, peroxisome, plasma membrane	55.61	53.9
TraesCS2A01G045500.1	Wheat	plasma membrane	53.77	53.59
TraesCS5A01G004400.1	Wheat	cytosol, nucleus, plasma membrane	54.61	53.27
Solyc06g071570.2.1	Tomato	plasma membrane	50.75	52.42
PGSC0003DMT400069660	Potato	plasma membrane	50.42	52.08
KRH03408	Soybean	cytosol, peroxisome, plasma membrane	49.92	50.34
CDY09846	Canola	plasma membrane	36.01	50.12
CDY45756	Canola	plasma membrane	47.91	50.09
Solyc03g113420.2.1	Tomato	plasma membrane	49.25	50.09
KRH56968	Soybean	plasma membrane	49.92	50.0
KRH56970	Soybean	cytosol, peroxisome, plasma membrane	49.92	49.92
PGSC0003DMT400065196	Potato	plasma membrane	49.25	49.75
Bra035886.1-P	Field mustard	plasma membrane	41.21	49.5
Bra025695.1-P	Field mustard	plasma membrane	48.07	49.48
CDY26715	Canola	plasma membrane	48.07	49.48
Solyc06g071090.1.1	Tomato	endoplasmic reticulum, plasma membrane	24.96	49.17
CDY00315	Canola	plasma membrane	50.25	49.02
Bra029248.1-P	Field mustard	plasma membrane	50.25	49.02
CDX84344	Canola	plasma membrane	49.41	49.0
CDY30731	Canola	plasma membrane	49.08	48.91
Bra010111.1-P	Field mustard	plasma membrane	50.08	48.86
CDY45754	Canola	plasma membrane	49.08	48.67
CDX83801	Canola	cytosol, peroxisome, plasma membrane	48.07	48.56
CDX81902	Canola	cytosol, peroxisome, plasma membrane	48.07	48.48
AT5G62680.1	Thale cress	golgi, peroxisome, vacuole	49.92	48.38
AT1G18880.1	Thale cress	cytosol, peroxisome, plasma membrane	47.24	48.04
Bra031054.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.57	47.97
CDY21692	Canola	plasma membrane	46.06	47.91
Bra019521.1-P	Field mustard	plasma membrane	48.74	47.63
KRH03412	Soybean	plasma membrane	46.73	47.61
CDY51783	Canola	cytosol, peroxisome, plasma membrane	47.74	47.26
Bra035885.1-P	Field mustard	peroxisome	44.56	47.16
CDY36913	Canola	cytosol, peroxisome, plasma membrane	48.58	47.15
Bra018096.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.58	47.15
KRH56969	Soybean	plasma membrane	48.07	46.97
KRH03409	Soybean	plasma membrane	48.07	46.9
CDY16763	Canola	peroxisome	45.06	46.86
CDX87266	Canola	peroxisome	44.89	46.77
CDY21805	Canola	cytosol, peroxisome, plasma membrane	48.24	46.38
CDX68450	Canola	cytosol, peroxisome, plasma membrane	47.57	46.18
CDX96690	Canola	plasma membrane	46.73	45.96
CDY69433	Canola	golgi, peroxisome, plastid	48.58	45.74
Bra033782.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.07	45.69
AT3G47960.1	Thale cress	plasma membrane	48.58	45.6
CDX83027	Canola	cytosol, peroxisome, plasma membrane	45.73	45.35
TraesCS3A01G418800.1	Wheat	plasma membrane	42.88	41.16
CDY16764	Canola	cytosol, mitochondrion, plasma membrane, plastid	40.2	40.47
TraesCS3A01G418700.1	Wheat	plasma membrane	40.87	40.2
TraesCS3A01G304500.1	Wheat	cytosol, peroxisome, plasma membrane	36.18	37.05
TraesCS7A01G206400.1	Wheat	cytosol, nucleus, peroxisome	37.86	36.57
TraesCS1A01G257900.1	Wheat	cytosol, nucleus, plasma membrane	35.68	35.86
TraesCS1A01G257800.1	Wheat	cytosol, peroxisome, plasma membrane	35.85	35.37
TraesCS1A01G257400.1	Wheat	plasma membrane	35.18	34.43
TraesCS3A01G304400.1	Wheat	plasma membrane	33.84	34.35
TraesCS4A01G440300.1	Wheat	plasma membrane	31.66	34.3
TraesCS7A01G054000.2	Wheat	plasma membrane	31.16	33.76
TraesCS4A01G440400.1	Wheat	plasma membrane	30.82	33.39
TraesCS4A01G440600.1	Wheat	plasma membrane	30.82	33.39
TraesCS7A01G121700.1	Wheat	golgi, peroxisome, plasma membrane	31.66	33.22
TraesCS4A01G440500.1	Wheat	plasma membrane	30.49	33.03
TraesCS7A01G054100.1	Wheat	plasma membrane	30.32	32.26
TraesCS4A01G440700.1	Wheat	plasma membrane	29.65	31.66
TraesCS7A01G121600.1	Wheat	plastid	28.64	30.92
TraesCS5A01G153200.1	Wheat	plasma membrane	29.98	30.65
Bra016534.1-P	Field mustard	plastid	47.57	27.52
VIT_17s0000g05550.t01	Wine grape	plasma membrane	52.93	18.44

Protein Annotations

EnsemblPlants:TraesCS4A01G283900.1	EnsemblPlantsGene:TraesCS4A01G283900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	InterPro:MFS_dom
InterPro:MFS_trans_sf	InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF129	PFAM:PF00854	SEG:seg
SUPFAM:SSF103473	TIGR:cd06174	TMHMM:TMhelix	MapMan:24.2.2.9	:	:

Description

No Description!

Coordinates

chr4A:+:590656013..590660306

Molecular Weight (calculated)

64989.9 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.260

Length

597 amino acids

Sequence
(BLAST)

001: MRGGGGREDE EAGQKLKSMD SGKGMDGGGG GSSGDDDSPH PPRPALKYHG WKAMPFIIGN ETFEKLGTLG TSANLLVYLT QVFHMRSVDA ATLLNGLNGT
101: TSLAPIVGAF LSDAYLGRYL ALAIASVASL IGMFFLTLTA GADSLHPADC GVGEVCEKAS SYQLAVLFIA FAFLVIGSAG IRPCSMPFGA DQFDPHTESG
201: KRGINSFFNW YYFTFTSAML VSATVIIYVQ SNVNWAIGLG IPTALMFLAC VLFFMGTRLY VRVIPEGSPF TTIVQVFAAA FAKRSLKQAK DPKQDLFDPP
301: HTSAIVTKLA HTDQFRCLDK AAMVAAPEEV RSGGAAAADP WRLCTVQQVE EVKCLIRIVP VWSTGIIYYV AVVQQSTYVV FSALQSDRRL GSSFHVPAAS
401: FTVFAMLAQT LWIPIYDRLL VPRLRKVTGK DEGFTLLQRQ GIGIALSTVA MIISAVVEDR RRDIALNQPN IGTTQTGGGI SAMSSFWMVP QLMILGLSEA
501: FNLISQIEFY YKEIPEHMRS VAGALAFCNL ALGNYLSGFL TTIVHRTTGG GQNWLAQDLN KGRLDLFYWM IAGIGVFNFV YFMICARWYR FKGTRDA

Best Arabidopsis Sequence Match ( AT5G62680.1 )
(BLAST)

001: MERKPLELES TDNHQNPSSA VYGGSVTAVD SVEEDVQNQK KVVYRGWKVM PFIIGNETFE KLGIIGTLSN LLVYLTAVFN LKSITAATII NAFSGTINFG
101: TFVAAFLCDT YFGRYKTLSV AVIACFLGSF VILLTAAVPQ LHPAACGTAA DSICNGPSGG QIAFLLMGLG FLVVGAGGIR PCNLAFGADQ FNPKSESGKR
201: GIDSFFNWYF FTFTFAQILS LTLVVYVQSN VSWTIGLTIP AVLMFLACLI FFAGDKLYVK IKASGSPLAG IAQVIAVAIK KRGLKPAKQP WLNLYNYYPP
301: KYANSKLKYT DQFRFLDKAA ILTPEDKLQP DGKPADPWKL CTMQQVEEVK CIVRVLPIWF ASSIYYLTIT QQMTYPVFQA LQSDRRLGSG GFVIPAATYV
401: VFLMTGMTVF IVVYDRVLVP TMRRITGLDT GITLLQRIGT GIFFATASLV VAGFVEERRR TFALTKPTLG MAPRKGEISS MSAMWLIPQL SLAGVAEAFA
501: AIGQMEFYYK QFPENMRSFA GSIFYVGGGV SSYLGSFLIA TVHRTTQNSS GGNWLAEDLN KGRLDLFYFM IAGILAVNFA YFLVMSRWYR YKGSDDEVTT
601: YETNENIIKQ QDKNVA

Arabidopsis Description

NPF2.11GTR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UEQ7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.