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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER91066 Sorghum cytosol, peroxisome, plasma membrane 89.1 88.2
Zm00001d033528_P003 Maize cytosol, peroxisome, plasma membrane 88.42 88.12
Zm00001d013529_P002 Maize plasma membrane 87.9 87.31
TraesCS4D01G026800.1 Wheat golgi, unclear 87.56 86.24
TraesCS4B01G029600.1 Wheat cytosol, peroxisome, plasma membrane 87.22 86.05
TraesCS4A01G283900.1 Wheat golgi, unclear 87.39 85.93
HORVU4Hr1G004460.1 Barley cytosol, peroxisome, plasma membrane 87.9 85.86
GSMUA_Achr4P22320_001 Banana plasma membrane 50.94 59.09
Os12t0638300-01 Rice extracellular, plasma membrane 56.56 56.56
PGSC0003DMT400065197 Potato mitochondrion 56.05 56.24
VIT_14s0066g02590.t01 Wine grape plasma membrane 55.88 56.07
Os12t0638200-01 Rice cytosol, endoplasmic reticulum, peroxisome 55.37 55.27
Solyc03g113430.2.1 Tomato plasma membrane 54.51 54.7
Os07t0190650-00 Rice cytosol, peroxisome, plasma membrane 56.9 54.05
Solyc06g071570.2.1 Tomato plasma membrane 52.47 53.29
PGSC0003DMT400069660 Potato plasma membrane 52.13 52.94
Solyc03g113420.2.1 Tomato plasma membrane 51.96 51.96
KRH03408 Soybean cytosol, peroxisome, plasma membrane 51.96 51.52
PGSC0003DMT400065196 Potato plasma membrane 51.79 51.44
KRH56970 Soybean cytosol, peroxisome, plasma membrane 52.13 51.26
KRH56968 Soybean plasma membrane 51.79 51.01
Bra035886.1-P Field mustard plasma membrane 42.76 50.5
CDY45756 Canola plasma membrane 49.06 50.44
Solyc06g071090.1.1 Tomato endoplasmic reticulum, plasma membrane 25.89 50.16
CDY09846 Canola plasma membrane 36.12 49.42
Bra025695.1-P Field mustard plasma membrane 48.55 49.14
CDY26715 Canola plasma membrane 48.55 49.14
CDY30731 Canola plasma membrane 49.74 48.75
Bra029248.1-P Field mustard plasma membrane 50.77 48.69
CDY45754 Canola plasma membrane 49.74 48.51
KRH03412 Soybean plasma membrane 48.38 48.46
CDX83801 Canola cytosol, peroxisome, plasma membrane 48.72 48.39
AT1G18880.1 Thale cress cytosol, peroxisome, plasma membrane 48.38 48.38
CDX84344 Canola plasma membrane 49.57 48.34
CDX81902 Canola cytosol, peroxisome, plasma membrane 48.72 48.31
Bra010111.1-P Field mustard plasma membrane 50.26 48.2
CDY00315 Canola plasma membrane 50.26 48.2
Bra031054.1-P Field mustard cytosol, peroxisome, plasma membrane 48.21 47.8
CDY21692 Canola plasma membrane 46.68 47.74
KRH03409 Soybean plasma membrane 49.74 47.71
AT5G62680.1 Thale cress golgi, peroxisome, vacuole 49.91 47.56
KRH56969 Soybean plasma membrane 49.4 47.46
Bra019521.1-P Field mustard plasma membrane 49.23 47.3
CDY36913 Canola cytosol, peroxisome, plasma membrane 49.4 47.15
Bra018096.1-P Field mustard cytosol, peroxisome, plasma membrane 49.23 46.99
Bra035885.1-P Field mustard peroxisome 45.14 46.99
CDY16763 Canola peroxisome 45.66 46.69
CDY51783 Canola cytosol, peroxisome, plasma membrane 47.87 46.6
CDX87266 Canola peroxisome 45.49 46.6
CDX68450 Canola cytosol, peroxisome, plasma membrane 48.38 46.18
CDX96690 Canola plasma membrane 47.53 45.96
CDY21805 Canola cytosol, peroxisome, plasma membrane 48.55 45.89
Bra033782.1-P Field mustard cytosol, peroxisome, plasma membrane 47.87 45.69
CDY69433 Canola golgi, peroxisome, plastid 49.23 45.58
CDX83027 Canola cytosol, peroxisome, plasma membrane 46.51 45.35
AT3G47960.1 Thale cress plasma membrane 48.89 45.13
Os01t0913300-01 Rice plasma membrane 44.8 43.83
CDY16764 Canola cytosol, mitochondrion, plasma membrane, plastid 41.74 41.32
Os06t0264500-01 Rice extracellular 39.52 38.86
Os05t0410500-01 Rice cytosol, plasma membrane 36.63 37.13
Os01t0761400-01 Rice plasma membrane 35.78 36.59
Os01t0960900-00 Rice cytosol 17.21 36.46
Os05t0410900-02 Rice plasma membrane 36.63 35.95
Os04t0660900-01 Rice plasma membrane, plastid 38.5 35.82
Os05t0411100-00 Rice cytosol, nucleus, plasma membrane 37.48 35.6
Os01t0761500-01 Rice plasma membrane 35.78 35.59
Os05t0338900-00 Rice plasma membrane 11.93 34.15
Os05t0410800-01 Rice cytosol, extracellular, mitochondrion 11.58 30.63
Bra016534.1-P Field mustard plastid 48.38 27.52
VIT_17s0000g05550.t01 Wine grape plasma membrane 55.71 19.08
Os07t0190600-01 Rice cytosol, plastid 0.0 0.0
Os01t0960800-01 Rice mitochondrion 0.0 0.0
Protein Annotations
MapMan:24.2.2.9EntrezGene:9269916ProteinID:AAT85061.1ProteinID:ABF98263.1EMBL:AK065253EMBL:AK099244
EMBL:AK099321ProteinID:BAS85814.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:IPR020846
InterPro:MFS_domInterPro:MFS_trans_sfEnsemblPlantsGene:Os03g0687000EnsemblPlants:Os03t0687000-02PFAM:PF00854InterPro:POT_fam
PANTHER:PTHR11654PANTHER:PTHR11654:SF129UniProt:Q6AVV6SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI00004014CA
RefSeq:XP_015630690.1SEG:seg::::
Description
NRT1/PTR family 2.4, NO3-/peptide transporter family 2.4Similar to predicted protein. (Os03t0687000-01);Nitrate transporter, Acquisition and long-distance transport of nitrate (Os03t0687000-02)
Coordinates
chr3:-:27413550..27418770
Molecular Weight (calculated)
63566.7 Da
IEP (calculated)
9.104
GRAVY (calculated)
0.324
Length
587 amino acids
Sequence
(BLAST)
001: MRGGGGGGGG GGEEAGQKLK SMDVDKLENG GDKPALKYHG WRAMPFIIGN ETFEKLGTLG TSANLLVYLT QVFHMRSVDA ATLLNGLNGT TSLAPIIGAF
101: LSDAYLGRYL ALAIASVASL IGMFLLTMTA AADGLHPAEC GVGETCSKAT SGQFAVLFMS FAFLVLGSAG IRPCSMPFGA DQFDPHTESG KRGINSFFNW
201: YYFTFTSAML VSATVIIYVQ SNVSWPIGLG IPTALMLLAC VLFFMGTRLY VRVTPEGSPF TSIVQVFAAA ARKRSLKQPK DPKQDLFDPP HTSAIVTKLA
301: HTDQFRCLDK AAIVSGPDDV RAGGAAPSNP WRLCSVQQVE EVKCLIRIVP VWSTGIIYYV AVVQQSTYVV LSALQSDRHL GRSFQIPAAS FTVFAMLAQT
401: LWIPIYDRLL VPRLRRVTGK DEGLTLLQRQ GIGIALSTVA MVMSAVVEDR RRHIALTQPT LGTTITGGAI SAMSSLWMVP QLMVLGLSEA FNLISQIEFY
501: YKEIPEHMRS VAGALAFCNL ALGNYLSGFL VTIVHRTTGA GSNWLAQDLN KGRLDLFYWM IAGIGIFNII YFMICAKWYR FKGAAAN
Best Arabidopsis Sequence Match ( AT5G62680.1 )
(BLAST)
001: MERKPLELES TDNHQNPSSA VYGGSVTAVD SVEEDVQNQK KVVYRGWKVM PFIIGNETFE KLGIIGTLSN LLVYLTAVFN LKSITAATII NAFSGTINFG
101: TFVAAFLCDT YFGRYKTLSV AVIACFLGSF VILLTAAVPQ LHPAACGTAA DSICNGPSGG QIAFLLMGLG FLVVGAGGIR PCNLAFGADQ FNPKSESGKR
201: GIDSFFNWYF FTFTFAQILS LTLVVYVQSN VSWTIGLTIP AVLMFLACLI FFAGDKLYVK IKASGSPLAG IAQVIAVAIK KRGLKPAKQP WLNLYNYYPP
301: KYANSKLKYT DQFRFLDKAA ILTPEDKLQP DGKPADPWKL CTMQQVEEVK CIVRVLPIWF ASSIYYLTIT QQMTYPVFQA LQSDRRLGSG GFVIPAATYV
401: VFLMTGMTVF IVVYDRVLVP TMRRITGLDT GITLLQRIGT GIFFATASLV VAGFVEERRR TFALTKPTLG MAPRKGEISS MSAMWLIPQL SLAGVAEAFA
501: AIGQMEFYYK QFPENMRSFA GSIFYVGGGV SSYLGSFLIA TVHRTTQNSS GGNWLAEDLN KGRLDLFYFM IAGILAVNFA YFLVMSRWYR YKGSDDEVTT
601: YETNENIIKQ QDKNVA
Arabidopsis Description
NPF2.11GTR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UEQ7]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.