Factsheet for TraesCS5D01G118400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G110200.1	Wheat	plastid	98.4	98.4
CDY22631	Canola	mitochondrion	3.79	3.12
CDY06363	Canola	mitochondrion	3.79	3.11
Solyc06g064660.2.1	Tomato	endoplasmic reticulum, plasma membrane	0.87	0.87
TraesCS4D01G086800.1	Wheat	mitochondrion	0.15	0.16
KRH06043	Soybean	nucleus	0.0	0.0
PGSC0003DMT400083223	Potato	cytosol	0.0	0.0
PGSC0003DMT400071458	Potato	nucleus	0.0	0.0
PGSC0003DMT400064016	Potato	nucleus	0.0	0.0
KRH77684	Soybean	nucleus	0.0	0.0
KRH27807	Soybean	nucleus	0.0	0.0
KRH26282	Soybean	nucleus	0.0	0.0
CDY70577	Canola	nucleus	0.0	0.0
HORVU5Hr1G035950.2	Barley	cytosol	0.0	0.0
GSMUA_Achr9P08070_001	Banana	nucleus	0.0	0.0
GSMUA_Achr6P28920_001	Banana	plastid	0.0	0.0
GSMUA_Achr6P17460_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P07440_001	Banana	cytosol	0.0	0.0
GSMUA_Achr5P16890_001	Banana	nucleus	0.0	0.0
GSMUA_Achr2P05620_001	Banana	cytosol	0.0	0.0
EES15821	Sorghum	mitochondrion	0.0	0.0
CDY67268	Canola	nucleus, plastid	0.0	0.0
TraesCS5B01G110400.1	Wheat	nucleus	0.0	0.0
Zm00001d023945_P003	Maize	mitochondrion	0.0	0.0
VIT_18s0001g06780.t01	Wine grape	nucleus	0.0	0.0
VIT_12s0035g01180.t01	Wine grape	nucleus	0.0	0.0
TraesCS7D01G435700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
TraesCS7D01G316100.1	Wheat	nucleus	0.0	0.0
TraesCS6D01G184000.1	Wheat	cytosol, nucleus, peroxisome	0.0	0.0
TraesCS5D01G118300.1	Wheat	endoplasmic reticulum, plasma membrane	0.0	0.0
TraesCS5D01G088700.2	Wheat	nucleus, plastid	0.0	0.0
Solyc01g103350.2.1	Tomato	nucleus	0.0	0.0
TraesCS5A01G110100.1	Wheat	endoplasmic reticulum, plasma membrane	0.0	0.0
TraesCS4D01G151100.1	Wheat	nucleus	0.0	0.0
TraesCS3D01G432000.1	Wheat	plasma membrane	0.0	0.0
TraesCS3D01G141000.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G190600.1	Wheat	plastid	0.0	0.0
TraesCS2D01G120200.1	Wheat	nucleus	0.0	0.0
TraesCS1D01G243300.1	Wheat	nucleus	0.0	0.0
Solyc11g045610.1.1	Tomato	nucleus	0.0	0.0
Bra020008.1-P	Field mustard	nucleus	0.0	0.0
CDX86879	Canola	nucleus	0.0	0.0
CDX72813	Canola	plastid	0.0	0.0
CDX68307	Canola	plastid	0.0	0.0
Bra037899.1-P	Field mustard	nucleus	0.0	0.0
Bra035472.1-P	Field mustard	nucleus	0.0	0.0
Bra031674.1-P	Field mustard	nucleus	0.0	0.0
Bra030788.1-P	Field mustard	nucleus	0.0	0.0
Bra028011.1-P	Field mustard	nucleus	0.0	0.0
Bra027895.1-P	Field mustard	nucleus	0.0	0.0
CDX93496	Canola	nucleus	0.0	0.0
Bra016132.1-P	Field mustard	plastid	0.0	0.0
Bra010213.1-P	Field mustard	nucleus	0.0	0.0
Bra007973.1-P	Field mustard	nucleus, plastid	0.0	0.0
Bra003921.1-P	Field mustard	plastid	0.0	0.0
AT4G10010.2	Thale cress	nucleus	0.0	0.0
AT1G71530.1	Thale cress	plastid	0.0	0.0
AT1G57700.1	Thale cress	nucleus	0.0	0.0
AT1G33770.1	Thale cress	nucleus	0.0	0.0
CDY31076	Canola	nucleus	0.0	0.0
AT1G09600.1	Thale cress	nucleus	0.0	0.0
CDY58380	Canola	nucleus	0.0	0.0
CDY53144	Canola	nucleus	0.0	0.0
CDY50891	Canola	nucleus, plastid	0.0	0.0
CDY48795	Canola	nucleus	0.0	0.0
CDY39924	Canola	nucleus	0.0	0.0
CDY36688	Canola	plastid	0.0	0.0
CDY31800	Canola	nucleus	0.0	0.0
CDY70545	Canola	nucleus	0.0	0.0
CDY29169	Canola	nucleus	0.0	0.0
CDY20686	Canola	nucleus	0.0	0.0
CDY15287	Canola	nucleus	0.0	0.0
CDY03697	Canola	nucleus, plastid	0.0	0.0
CDX99520	Canola	nucleus	0.0	0.0
CDX96330	Canola	plastid	0.0	0.0
CDX94278	Canola	cytosol, mitochondrion, nucleus, plasma membrane	0.0	0.0
CDX93753	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5D01G118400.1	EnsemblPlantsGene:TraesCS5D01G118400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF755
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr5D:-:158170800..158172860

Molecular Weight (calculated)

75123.5 Da

IEP (calculated)

9.522

GRAVY (calculated)

0.051

Length

686 amino acids

Sequence
(BLAST)

001: MAITMASTSS PVAALKHPHF LDSKPLKPLK RARTRSCALA DADAAAAAPR TSQAELRPDS KNAPALSAEI RRLVRAGRLR SALCLLDHLS HRGVPASPSA
101: FTALLSACRS LAHARQIHAH LRVHGLDSNE FLLARLVEVY LAVGAAEEAR QVLGGLPRAS AFSWNALLHG HVRRGRREAG DAVAGGFVEM RAAGANANEY
201: TYGCVLKSIS GSARPSMVMA TATHAMLVKN AFAGAPGMLM TGLMDVYFRC GKVKLAMMVF EEMPERDVVA WGAVISGFAH KGMKREALEH FRWMVENGVK
301: VNSVVLTSIV PVIGDLRARN LGREIHVLVL KKFPDRKDVA KVHAGLVDMY CKCGDMVSGR RVFYSTKKRN AVSWTALMSG YASNGRPDQA LRCIVWMQQE
401: GIRPDLVAVG TVLPVCTKLR ALSEGKEIHA YALRRWFLPN VSLCTSLITL YGACCHLEYS RRVFHAMDKK TVRAWTALVD AYLKNRDSST AIEVFRSMLL
501: SNRRPDAVAI TRILSACSDI GALQLGKEVH GQVLKLRMEP LPLVAAELVN MYGRCGDLKA AQRVFNRTES KGSLTCTAII EAYAINQRHK EALDLFSWML
601: SNNFAPTIVT FNVVLRICDA AGLHDEALEI FDSMVQGYNL EASEENYDCI ISLLTSAGRT AEAQCFADLK AALFSSPAPF LDFEQH

Best Arabidopsis Sequence Match ( AT1G71460.1 )
(BLAST)

001: MEVVSSLGIR DLPASLSVTT SLNHRPHRSD KDGAPAKSPI RPSRTRRPST SPAKKPKPFR ERDAFPSSLP LHSKNPYIIH RDIQIFARQN NLEVALTILD
101: YLEQRGIPVN ATTFSALLEA CVRRKSLLHG KQVHVHIRIN GLESNEFLRT KLVHMYTACG SVKDAQKVFD ESTSSNVYSW NALLRGTVIS GKKRYQDVLS
201: TFTEMRELGV DLNVYSLSNV FKSFAGASAL RQGLKTHALA IKNGLFNSVF LKTSLVDMYF KCGKVGLARR VFDEIVERDI VVWGAMIAGL AHNKRQWEAL
301: GLFRTMISEE KIYPNSVILT TILPVLGDVK ALKLGKEVHA HVLKSKNYVE QPFVHSGLID LYCKCGDMAS GRRVFYGSKQ RNAISWTALM SGYAANGRFD
401: QALRSIVWMQ QEGFRPDVVT IATVLPVCAE LRAIKQGKEI HCYALKNLFL PNVSLVTSLM VMYSKCGVPE YPIRLFDRLE QRNVKAWTAM IDCYVENCDL
501: RAGIEVFRLM LLSKHRPDSV TMGRVLTVCS DLKALKLGKE LHGHILKKEF ESIPFVSARI IKMYGKCGDL RSANFSFDAV AVKGSLTWTA IIEAYGCNEL
601: FRDAINCFEQ MVSRGFTPNT FTFTAVLSIC SQAGFVDEAY RFFNLMLRMY NLQPSEEHYS LVIELLNRCG RVEEAQRLAV MSSSSSLQT

Arabidopsis Description

PCMP-A3Pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9I3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.