Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G157500.1 | Wheat | cytosol | 90.23 | 88.58 |
| TraesCS2A01G496500.1 | Wheat | nucleus | 43.26 | 58.86 |
| TraesCS2A01G496300.1 | Wheat | mitochondrion | 56.28 | 55.76 |
| TraesCS2A01G496400.1 | Wheat | mitochondrion | 41.4 | 55.28 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 44.19 | 39.26 |
| TraesCS7A01G281000.1 | Wheat | cytosol | 38.14 | 38.32 |
| TraesCS3A01G497600.1 | Wheat | extracellular | 36.74 | 36.74 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 40.47 | 35.37 |
| TraesCS1A01G192800.1 | Wheat | cytosol, mitochondrion, nucleus | 40.93 | 32.59 |
| OQU84555 | Sorghum | cytosol | 19.53 | 31.82 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 40.0 | 31.27 |
| KXG29686 | Sorghum | cytosol | 27.44 | 30.89 |
| EES04679 | Sorghum | cytosol | 27.44 | 30.73 |
| Zm00001d015868_P001 | Maize | nucleus | 29.3 | 29.3 |
| TraesCS3A01G497900.1 | Wheat | cytosol | 30.7 | 28.82 |
| TraesCS1A01G068200.1 | Wheat | nucleus | 33.02 | 28.74 |
| TraesCS6A01G248200.1 | Wheat | cytosol | 26.05 | 27.59 |
| TraesCS6A01G145200.1 | Wheat | nucleus | 29.77 | 27.0 |
| TraesCS6A01G156600.1 | Wheat | cytosol | 30.23 | 26.75 |
| TraesCS7A01G479100.1 | Wheat | nucleus | 31.16 | 26.27 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G168400.1 | EnsemblPlantsGene:TraesCS6A01G168400 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF31 | PFAM:PF04640 |
| SEG:seg | MapMan:15.5.43 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:174449485..174452277
Molecular Weight (calculated)
24120.8 Da
IEP (calculated)
6.599
GRAVY (calculated)
-0.313
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMRFGHEAA AAEGRTPAWL GPLLGAEFFK PCATHPYLVK YECNHYCLDC AGEDDAICCT QCVFAHRNHH IVQIRKSSYR EVIRVAELKE VADISQVQTY
101: VINYNRVVFL NRRPQAPQHG VKCVGPAGAC LECGQGLVDA NFLFCSLSCK LDGMVSDPNL TFIVDPRCNR EDPVLEIEEE DEGSDGLPGS SNRLPGWISY
201: RRRPRKGIPE RAPFY
101: VINYNRVVFL NRRPQAPQHG VKCVGPAGAC LECGQGLVDA NFLFCSLSCK LDGMVSDPNL TFIVDPRCNR EDPVLEIEEE DEGSDGLPGS SNRLPGWISY
201: RRRPRKGIPE RAPFY
001: MVSSIVKMEN DDVMTPPWLT PMLRADYFVT CSIHSQSSKS ECNLFCLDCS GNAFCSSCLA HHRTHRVIQI RRSSYHNVVR VSEIQKHIDI SCIQTYVINS
101: AKIFFLNARP QCRTGKSLNK TCQICSRNLL DSFLFCSLAC KLEGVKNGED PNLTLFHSGK SDDSSKIINT GICSRLIDGI SIAVDDQRSE TAGVLSPETP
201: SIESHRNYPM KSRRKGIPQR APF
101: AKIFFLNARP QCRTGKSLNK TCQICSRNLL DSFLFCSLAC KLEGVKNGED PNLTLFHSGK SDDSSKIINT GICSRLIDGI SIAVDDQRSE TAGVLSPETP
201: SIESHRNYPM KSRRKGIPQR APF
Arabidopsis Description
PLATZ transcription factor family protein [Source:TAIR;Acc:AT1G43000]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.