Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G291400.1 | Wheat | nucleus | 87.27 | 96.77 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 86.55 | 95.58 |
| KXG30975 | Sorghum | nucleus | 77.09 | 84.13 |
| Os02t0692700-01 | Rice | nucleus | 78.55 | 84.05 |
| Zm00001d051511_P001 | Maize | nucleus | 71.27 | 78.09 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 68.36 | 76.42 |
| KRH75604 | Soybean | nucleus | 58.18 | 76.19 |
| KRH74408 | Soybean | nucleus | 61.09 | 71.19 |
| PGSC0003DMT400045164 | Potato | nucleus | 58.18 | 70.48 |
| KRH39550 | Soybean | nucleus | 60.36 | 70.34 |
| Solyc08g076860.2.1 | Tomato | nucleus | 57.82 | 69.74 |
| AT1G32700.1 | Thale cress | cytosol | 52.73 | 68.08 |
| KRH24008 | Soybean | cytosol | 54.18 | 66.82 |
| Solyc06g061240.2.1 | Tomato | nucleus | 54.18 | 66.52 |
| PGSC0003DMT400019836 | Potato | nucleus | 53.82 | 66.37 |
| CDY01500 | Canola | nucleus | 51.64 | 66.36 |
| Bra035494.1-P | Field mustard | nucleus | 52.73 | 66.21 |
| KRH29309 | Soybean | cytoskeleton, cytosol, nucleus | 53.45 | 65.92 |
| Bra012632.1-P | Field mustard | nucleus | 51.27 | 65.89 |
| PGSC0003DMT400046007 | Potato | cytosol | 53.45 | 65.62 |
| CDX90437 | Canola | nucleus | 50.91 | 65.42 |
| VIT_16s0039g01560.t01 | Wine grape | nucleus | 54.91 | 65.37 |
| KRH27687 | Soybean | cytosol | 54.91 | 64.81 |
| AT4G17900.1 | Thale cress | nucleus | 53.45 | 64.76 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 61.09 | 64.12 |
| CDY08880 | Canola | nucleus | 51.64 | 63.39 |
| CDY44504 | Canola | nucleus | 52.0 | 63.0 |
| CDX78810 | Canola | nucleus | 52.0 | 63.0 |
| Solyc08g005100.2.1 | Tomato | cytosol | 51.27 | 62.95 |
| Bra021029.1-P | Field mustard | nucleus | 51.27 | 62.95 |
| CDX76551 | Canola | nucleus | 51.27 | 62.95 |
| Bra013266.1-P | Field mustard | nucleus | 50.91 | 61.67 |
| KRH77790 | Soybean | nucleus | 56.0 | 61.35 |
| CDY35177 | Canola | nucleus | 48.73 | 58.52 |
| Bra017531.1-P | Field mustard | nucleus | 48.73 | 58.52 |
| CDY69910 | Canola | nucleus | 48.0 | 58.41 |
| CDY69918 | Canola | nucleus | 47.64 | 57.96 |
| CDY03199 | Canola | nucleus | 46.91 | 57.33 |
| Bra025003.1-P | Field mustard | nucleus | 46.91 | 57.08 |
| Bra022055.1-P | Field mustard | nucleus | 44.36 | 54.71 |
| CDY66745 | Canola | nucleus | 44.36 | 54.71 |
| CDX87686 | Canola | nucleus | 45.82 | 54.55 |
| CDY72135 | Canola | cytosol, nucleus | 42.55 | 54.42 |
| Bra022058.1-P | Field mustard | nucleus | 44.36 | 53.28 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 53.82 | 52.11 |
| Bra023280.1-P | Field mustard | mitochondrion | 53.45 | 51.94 |
| CDX87684 | Canola | nucleus | 44.36 | 51.91 |
| AT5G46710.1 | Thale cress | nucleus | 42.55 | 51.77 |
| TraesCS1A01G192800.1 | Wheat | cytosol, mitochondrion, nucleus | 50.55 | 51.48 |
| CDY44664 | Canola | plasma membrane | 53.82 | 50.34 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 40.73 | 46.28 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 51.27 | 43.93 |
| TraesCS7A01G281000.1 | Wheat | cytosol | 34.18 | 43.93 |
| TraesCS3A01G497600.1 | Wheat | extracellular | 32.0 | 40.93 |
| TraesCS6A01G168400.1 | Wheat | cytosol | 31.27 | 40.0 |
| TraesCS1A01G068200.1 | Wheat | nucleus | 34.18 | 38.06 |
| TraesCS2A01G496400.1 | Wheat | mitochondrion | 22.18 | 37.89 |
| TraesCS2A01G496300.1 | Wheat | mitochondrion | 28.36 | 35.94 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 45.82 | 34.62 |
| TraesCS2A01G496500.1 | Wheat | nucleus | 19.64 | 34.18 |
| TraesCS3A01G497900.1 | Wheat | cytosol | 25.82 | 31.0 |
| TraesCS6A01G145200.1 | Wheat | nucleus | 26.18 | 30.38 |
| TraesCS6A01G248200.1 | Wheat | cytosol | 21.82 | 29.56 |
| TraesCS6A01G156600.1 | Wheat | cytosol | 25.82 | 29.22 |
| TraesCS7A01G479100.1 | Wheat | nucleus | 26.91 | 29.02 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G264400.2 | EnsemblPlantsGene:TraesCS6A01G264400 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF10 | PFAM:PF04640 |
| SEG:seg | MapMan:15.5.43 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:488062130..488063173
Molecular Weight (calculated)
29760.3 Da
IEP (calculated)
9.154
GRAVY (calculated)
-0.441
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIDHASPLA LKSGGATGGA GCEDEEAENQ RWPPWLKPLL ATSFFVQCRA HADAHKSECN MYCLDCVNGA LCSLCLAHHR DHHAIQIRRS SYHDVIRASE
101: IQRVLDITGV QTYIINSARV VFLNERPQPR PGKGVTNTCE VCERSLLDSF RFCSLGCKVC ICPPYNPSFG HGLAHCKLVT STASSAPQIV GTSGGHRPRK
201: KHGGKKKKRA AVKDARSDSE HSCTSTSGGS SDKSSVVQSF SPSTPPATSS SYRAGNKRRK GIPHRSPFGS LIVEY
101: IQRVLDITGV QTYIINSARV VFLNERPQPR PGKGVTNTCE VCERSLLDSF RFCSLGCKVC ICPPYNPSFG HGLAHCKLVT STASSAPQIV GTSGGHRPRK
201: KHGGKKKKRA AVKDARSDSE HSCTSTSGGS SDKSSVVQSF SPSTPPATSS SYRAGNKRRK GIPHRSPFGS LIVEY
001: MGPMIRTEEE EDYTSPPWLM PMLRGSYFVP CSIHVDSNKN ECNLFCLDCA GNAFCSYCLV KHKDHRVVQI RRSSYHNVVR VNEIQKFIDI ACVQTYIINS
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
Arabidopsis Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.