Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045164 | Potato | nucleus | 97.37 | 97.8 |
| KRH75604 | Soybean | nucleus | 80.26 | 87.14 |
| KRH74408 | Soybean | nucleus | 81.58 | 78.81 |
| Solyc06g061240.2.1 | Tomato | nucleus | 76.75 | 78.12 |
| KRH39550 | Soybean | nucleus | 80.7 | 77.97 |
| Solyc08g005100.2.1 | Tomato | cytosol | 74.12 | 75.45 |
| AT1G32700.1 | Thale cress | cytosol | 68.42 | 73.24 |
| Bra035494.1-P | Field mustard | nucleus | 69.3 | 72.15 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 81.58 | 70.99 |
| CDY01500 | Canola | nucleus | 66.23 | 70.56 |
| Bra012632.1-P | Field mustard | nucleus | 65.35 | 69.63 |
| CDX90437 | Canola | nucleus | 65.35 | 69.63 |
| CDY44504 | Canola | nucleus | 67.98 | 68.28 |
| CDX78810 | Canola | nucleus | 67.54 | 67.84 |
| AT4G17900.1 | Thale cress | nucleus | 67.11 | 67.4 |
| Bra013266.1-P | Field mustard | nucleus | 67.11 | 67.4 |
| CDX76551 | Canola | nucleus | 64.47 | 65.62 |
| Bra021029.1-P | Field mustard | nucleus | 64.47 | 65.62 |
| CDY08880 | Canola | nucleus | 64.04 | 65.18 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 70.18 | 64.52 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 70.18 | 64.26 |
| Os04t0591100-01 | Rice | nucleus | 69.3 | 63.45 |
| Os02t0692700-01 | Rice | nucleus | 71.49 | 63.42 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 67.11 | 62.2 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 67.11 | 62.2 |
| EES12755 | Sorghum | nucleus | 68.42 | 62.15 |
| KXG30975 | Sorghum | nucleus | 68.42 | 61.9 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 66.67 | 61.79 |
| Zm00001d002489_P001 | Maize | nucleus | 67.98 | 60.55 |
| Zm00001d017682_P001 | Maize | nucleus | 66.67 | 60.32 |
| Zm00001d026047_P002 | Maize | nucleus | 65.79 | 59.29 |
| Zm00001d051511_P001 | Maize | nucleus | 64.91 | 58.96 |
| CDY35177 | Canola | nucleus | 58.77 | 58.52 |
| CDY69918 | Canola | nucleus | 57.89 | 58.41 |
| Bra017531.1-P | Field mustard | nucleus | 58.33 | 58.08 |
| CDY69910 | Canola | nucleus | 57.46 | 57.96 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 69.74 | 57.82 |
| CDY03199 | Canola | nucleus | 57.02 | 57.78 |
| CDY72135 | Canola | cytosol, nucleus | 54.39 | 57.67 |
| Bra025003.1-P | Field mustard | nucleus | 57.02 | 57.52 |
| CDY66745 | Canola | nucleus | 54.82 | 56.05 |
| Bra022055.1-P | Field mustard | nucleus | 54.82 | 56.05 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 69.74 | 55.99 |
| Bra023280.1-P | Field mustard | mitochondrion | 68.86 | 55.48 |
| Bra022058.1-P | Field mustard | nucleus | 54.82 | 54.59 |
| CDX87686 | Canola | nucleus | 55.26 | 54.55 |
| CDY44664 | Canola | plasma membrane | 68.86 | 53.4 |
| CDX87684 | Canola | nucleus | 54.39 | 52.77 |
| Solyc10g085800.1.1 | Tomato | extracellular | 47.37 | 52.68 |
| AT5G46710.1 | Thale cress | nucleus | 52.19 | 52.65 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 56.14 | 39.88 |
| Solyc07g049130.1.1 | Tomato | nucleus | 26.75 | 38.36 |
| Solyc07g049120.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 26.75 | 38.36 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 57.02 | 35.71 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 37.28 | 34.0 |
| Solyc02g033100.1.1 | Tomato | nucleus | 26.32 | 33.15 |
| Solyc04g008090.2.1 | Tomato | cytosol | 30.7 | 32.86 |
| Solyc02g036230.1.1 | Tomato | nucleus | 25.44 | 32.04 |
| Solyc02g033110.1.1 | Tomato | nucleus | 21.49 | 30.62 |
| Solyc12g010470.1.1 | Tomato | cytosol | 32.89 | 30.49 |
| Solyc02g068510.1.1 | Tomato | cytosol | 32.02 | 30.29 |
| Solyc07g007320.1.1 | Tomato | cytosol | 33.77 | 30.2 |
| Solyc02g036140.1.1 | Tomato | nucleus | 22.37 | 30.18 |
| Solyc02g033120.1.1 | Tomato | nucleus | 21.05 | 30.0 |
| Solyc02g036170.1.1 | Tomato | nucleus | 21.93 | 29.59 |
| Solyc02g036200.1.1 | Tomato | nucleus | 21.93 | 27.93 |
| Solyc02g036130.1.1 | Tomato | cytosol | 16.67 | 27.74 |
| Solyc02g036120.1.1 | Tomato | peroxisome | 17.11 | 24.07 |
Protein Annotations
| EnsemblPlants:Solyc08g076860.2.1 | EnsemblPlantsGene:Solyc08g076860.2 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| SEG:seg | UniParc:UPI000276C0B3 | UniProt:K4CN46 | MapMan:15.5.43 | : | : |
Description
No Description!
Coordinates
chr8:-:60768691..60770808
Molecular Weight (calculated)
25572.5 Da
IEP (calculated)
9.609
GRAVY (calculated)
-0.616
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGGPDEED NRWPPWLKPL LKERFFVQCK LHVDSHKSEC NMYCLDCMDG ALCSICLSHH KDHRAIQIRR SSYHDVIRVN EIQKFLDITS VQTYIINSAK
101: VVFLNERPQP RPGKGVTNTC EVCERSLLDS FRFCSLGCKI VGTSKNFVKR PKQSPEKKKS SPAAAAAVYD SEDSYSSSSH GRQNSTSNKV HQSFSPSTPP
201: PTSVNYRTAK RRKGIPHRAP MGGLVIGY
101: VVFLNERPQP RPGKGVTNTC EVCERSLLDS FRFCSLGCKI VGTSKNFVKR PKQSPEKKKS SPAAAAAVYD SEDSYSSSSH GRQNSTSNKV HQSFSPSTPP
201: PTSVNYRTAK RRKGIPHRAP MGGLVIGY
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.