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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • plastid 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
MultiLoc:plasma membrane
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_15s0048g00580.t01 Wine grape nucleus 71.2 71.2
KRG88921 Soybean nucleus 63.2 65.29
KRH75326 Soybean extracellular, plasma membrane 66.4 59.93
GSMUA_Achr11P... Banana cytosol 50.0 53.65
AT3G60670.1 Thale cress cytosol 51.2 52.24
Bra014478.1-P Field mustard cytosol 48.8 49.19
CDX89067 Canola cytosol 48.4 48.79
CDY48369 Canola cytosol 48.4 48.59
CDY41149 Canola cytosol, extracellular, nucleus 44.4 48.26
Bra007550.1-P Field mustard extracellular, nucleus, vacuole 44.0 47.83
CDX71792 Canola cytosol 45.6 46.91
Solyc12g010470.1.1 Tomato cytosol 44.8 45.53
Solyc07g007320.1.1 Tomato cytosol 46.0 45.1
Solyc02g068510.1.1 Tomato cytosol 42.4 43.98
Solyc08g005100.2.1 Tomato cytosol 33.6 37.5
Solyc08g076860.2.1 Tomato nucleus 34.0 37.28
Solyc06g061240.2.1 Tomato nucleus 32.8 36.61
Solyc10g085800.1.1 Tomato extracellular 30.0 36.59
Solyc07g049130.1.1 Tomato nucleus 23.2 36.48
Solyc07g049120.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 23.2 36.48
Solyc04g008090.2.1 Tomato cytosol 28.0 32.86
Solyc02g033100.1.1 Tomato nucleus 23.6 32.6
Solyc02g036230.1.1 Tomato nucleus 21.6 29.83
Solyc02g033110.1.1 Tomato nucleus 18.4 28.75
Solyc02g036170.1.1 Tomato nucleus 19.2 28.4
Solyc02g033120.1.1 Tomato nucleus 18.0 28.12
Solyc02g036200.1.1 Tomato nucleus 19.2 26.82
Solyc02g036140.1.1 Tomato nucleus 18.0 26.63
Solyc02g036120.1.1 Tomato peroxisome 16.8 25.93
Solyc02g036130.1.1 Tomato cytosol 14.0 25.55
Protein Annotations
EnsemblPlants:Solyc01g091000.2.1EnsemblPlantsGene:Solyc01g091000.2InterPro:DUF597PANTHER:PTHR31065PANTHER:PTHR31065:SF1PFAM:PF04640
SEG:segUniParc:UPI0002767FF5UniProt:K4AZ40MapMan:15.5.43::
Description
No Description!
Coordinates
chr1:-:84702188..84703494
Molecular Weight (calculated)
27769.5 Da
IEP (calculated)
8.438
GRAVY (calculated)
-0.272
Length
250 amino acids
Sequence
(BLAST)
001: MLDYAQNLPQ WLITLLTEKF FNACIIHEDA KKNEKNVFCL DCCEGICPHC LSPHRSHRLL QIRRYVYHDV IRLGDANKLL DCAFVQSYTT NSAKVVFLNQ
101: RPQTRASRGS GNCCIICDRG LQDPFLFCSV SCKVQHILKT EGKLTKYIYR CEYMTLPEPG LDDGQMTPDT ILEPIGSVRT ESGSSGSGGA AEEVGCRTVG
201: CTATTEVVRK KRSTLSAFRS VFQPGCGPGS GISVSMLNRR KGTPQRSPLY
Best Arabidopsis Sequence Match ( AT3G60670.1 )
(BLAST)
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.