Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89067 | Canola | cytosol | 95.98 | 96.37 |
| Bra014478.1-P | Field mustard | cytosol | 95.58 | 95.97 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 81.53 | 88.26 |
| CDX71792 | Canola | cytosol | 84.34 | 86.42 |
| AT3G60670.1 | Thale cress | cytosol | 80.32 | 81.63 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 36.55 | 66.91 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 55.42 | 55.2 |
| KRG88921 | Soybean | nucleus | 53.41 | 54.96 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 51.0 | 52.05 |
| GSMUA_Achr11P... | Banana | cytosol | 47.79 | 51.07 |
| KRH75326 | Soybean | extracellular, plasma membrane | 54.22 | 48.74 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.59 | 48.4 |
| CDX98234 | Canola | cytosol | 32.53 | 47.09 |
| CDY37203 | Canola | cytosol | 43.78 | 42.75 |
| CDX81439 | Canola | cytosol | 43.78 | 42.58 |
| CDY12444 | Canola | nucleus | 39.36 | 40.83 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 39.76 | 40.74 |
| CDX89603 | Canola | cytosol | 44.98 | 40.43 |
| CDX93111 | Canola | cytosol | 44.98 | 40.43 |
| CDY27171 | Canola | nucleus | 38.96 | 40.42 |
| CDY02353 | Canola | mitochondrion, nucleus | 26.91 | 36.22 |
| CDY01500 | Canola | nucleus | 30.92 | 35.98 |
| CDX90437 | Canola | nucleus | 30.52 | 35.51 |
| CDY30518 | Canola | cytosol | 26.91 | 35.08 |
| CDY43172 | Canola | nucleus | 28.11 | 34.83 |
| CDX78810 | Canola | nucleus | 31.33 | 34.36 |
| CDY44504 | Canola | nucleus | 30.92 | 33.92 |
| CDY66745 | Canola | nucleus | 30.12 | 33.63 |
| CDX71409 | Canola | nucleus | 25.3 | 33.51 |
| CDY72135 | Canola | cytosol, nucleus | 28.92 | 33.49 |
| CDX76551 | Canola | nucleus | 30.12 | 33.48 |
| CDY04518 | Canola | nucleus | 25.3 | 33.33 |
| CDY08880 | Canola | nucleus | 29.72 | 33.04 |
| CDX87686 | Canola | nucleus | 30.12 | 32.47 |
| CDY03199 | Canola | nucleus | 29.32 | 32.44 |
| CDY35177 | Canola | nucleus | 29.72 | 32.31 |
| CDY69910 | Canola | nucleus | 29.32 | 32.3 |
| CDY36264 | Canola | nucleus | 24.9 | 32.29 |
| CDY69918 | Canola | nucleus | 28.92 | 31.86 |
| CDY09414 | Canola | cytosol | 27.31 | 30.91 |
| CDX87684 | Canola | nucleus | 28.92 | 30.64 |
| CDY17645 | Canola | nucleus | 27.71 | 29.61 |
| CDX88300 | Canola | nucleus | 27.71 | 29.11 |
| CDX87583 | Canola | nucleus | 27.71 | 28.99 |
| CDX68093 | Canola | nucleus | 27.71 | 28.87 |
| CDY01340 | Canola | cytosol | 26.91 | 28.76 |
| CDY04591 | Canola | cytosol | 28.11 | 28.69 |
| CDY29486 | Canola | cytosol | 27.71 | 28.28 |
| CDY00356 | Canola | cytosol | 27.31 | 27.87 |
| CDY33661 | Canola | cytosol | 26.91 | 27.57 |
| CDX85958 | Canola | nucleus | 26.91 | 26.8 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 30.52 | 26.76 |
| CDY44664 | Canola | plasma membrane | 30.52 | 25.85 |
| CDX96610 | Canola | cytosol | 26.91 | 25.38 |
| CDY06424 | Canola | cytosol | 20.48 | 22.37 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 27.71 | 18.96 |
Protein Annotations
| EnsemblPlants:CDY48369 | EnsemblPlantsGene:GSBRNA2T00089359001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | PFAM:PF04640 |
| ProteinID:CDY48369 | ProteinID:CDY48369.1 | SEG:seg | UniParc:UPI0004EF1ABF | UniProt:A0A078IG52 | MapMan:15.5.43 |
Description
BnaC04g22060DBnaC04g22060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG52]
Coordinates
chrLK032768:-:72151..73574
Molecular Weight (calculated)
27929.5 Da
IEP (calculated)
8.281
GRAVY (calculated)
-0.230
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGSILQME TKEFPAWLEV LLKEKFFNAC LEHEAVKKNE KNILCIDCCL SICPHCLPSH NSHRLLQIRR YVYNDVLRVE DGSKLMDCSL IQPYITNSSK
101: VVFINERPHS RQFRGSGNFC YTCDRSLQSP YVFCSLSCKI SDVIMRQRGL SGFLHVCNFL QLTDEGATTS TTPSSTLEAT DSGGDGGVDM FWCQALACTA
201: STEVVRKKRS SLTATCRRVT TAVASTNSEA PVNFFNRRKN TPPQRAPLY
101: VVFINERPHS RQFRGSGNFC YTCDRSLQSP YVFCSLSCKI SDVIMRQRGL SGFLHVCNFL QLTDEGATTS TTPSSTLEAT DSGGDGGVDM FWCQALACTA
201: STEVVRKKRS SLTATCRRVT TAVASTNSEA PVNFFNRRKN TPPQRAPLY
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.