Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014478.1-P | Field mustard | cytosol | 83.27 | 82.26 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 77.14 | 82.17 |
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 76.73 | 81.74 |
| CDX89067 | Canola | cytosol | 82.45 | 81.45 |
| CDX71792 | Canola | cytosol | 80.41 | 81.07 |
| CDY48369 | Canola | cytosol | 81.63 | 80.32 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 36.33 | 65.44 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 59.18 | 58.0 |
| KRG88921 | Soybean | nucleus | 54.29 | 54.96 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 53.06 | 53.28 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 52.24 | 51.2 |
| KRH75326 | Soybean | extracellular, plasma membrane | 57.55 | 50.9 |
| GSMUA_Achr11P... | Banana | cytosol | 47.76 | 50.21 |
| AT2G12646.1 | Thale cress | nucleus | 45.31 | 43.36 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 39.59 | 39.92 |
| AT1G31040.1 | Thale cress | nucleus | 38.37 | 38.68 |
| AT1G32700.1 | Thale cress | cytosol | 30.61 | 35.21 |
| AT4G17900.1 | Thale cress | nucleus | 31.02 | 33.48 |
| AT2G01818.1 | Thale cress | nucleus | 28.57 | 31.53 |
| AT1G43000.2 | Thale cress | cytosol | 26.94 | 29.6 |
| AT5G46710.1 | Thale cress | nucleus | 26.53 | 28.76 |
| AT1G21000.1 | Thale cress | cytosol | 27.76 | 27.64 |
| AT1G76590.1 | Thale cress | cytosol | 27.35 | 27.35 |
| AT2G27930.5 | Thale cress | plastid | 20.41 | 26.04 |
Protein Annotations
| ArrayExpress:AT3G60670 | EMBL:BT020234 | EMBL:BT020501 | EnsemblPlants:AT3G60670.1 | EnsemblPlantsGene:AT3G60670 | EntrezGene:825238 |
| GO:GO:0008150 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | PFAM:PF04640 | ProteinID:AEE80095.1 |
| ProteinID:CAB82671.1 | RefSeq:AT3G60670 | RefSeq:AT3G60670-TAIR-G | RefSeq:NP_191626.1 | SEG:seg | TAIR:AT3G60670 |
| TAIR:AT3G60670.1 | UniParc:UPI00000A08A1 | UniProt:Q9LZZ6 | MapMan:15.5.43 | : | : |
Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
Coordinates
chr3:-:22424436..22426369
Molecular Weight (calculated)
27746.1 Da
IEP (calculated)
7.859
GRAVY (calculated)
-0.383
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.