Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P36360_001 | Banana | cytosol | 51.57 | 56.93 |
| PGSC0003DMT400025721 | Potato | plastid | 42.15 | 54.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.88 | 53.96 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 42.6 | 51.63 |
| AT1G21000.1 | Thale cress | cytosol | 55.61 | 50.41 |
| AT1G76590.1 | Thale cress | cytosol | 54.71 | 49.8 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 49.78 | 48.9 |
| AT1G32700.1 | Thale cress | cytosol | 43.95 | 46.01 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 48.88 | 45.04 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 48.88 | 45.04 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 48.43 | 44.63 |
| Os06t0624900-01 | Rice | cytosol | 50.22 | 44.27 |
| AT4G17900.1 | Thale cress | nucleus | 44.84 | 44.05 |
| OQU76729 | Sorghum | cytosol, plastid | 50.22 | 43.75 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 45.74 | 42.68 |
| AT5G46710.1 | Thale cress | nucleus | 40.36 | 39.82 |
| AT2G27930.5 | Thale cress | plastid | 28.7 | 33.33 |
| AT1G31040.1 | Thale cress | nucleus | 33.63 | 30.86 |
| AT2G01818.1 | Thale cress | nucleus | 28.7 | 28.83 |
| AT2G12646.1 | Thale cress | nucleus | 31.39 | 27.34 |
| AT3G60670.1 | Thale cress | cytosol | 29.6 | 26.94 |
Protein Annotations
| ArrayExpress:AT1G43000 | EnsemblPlants:AT1G43000.2 | EnsemblPlantsGene:AT1G43000 | EntrezGene:840898 | GO:GO:0008150 | InterPro:DUF597 |
| PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 | ProteinID:AAG51520.1 | ProteinID:AEE31936.1 | ProteinID:ANM60243.1 |
| ProteinID:OAP11839.1 | RefSeq:AT1G43000 | RefSeq:AT1G43000-TAIR-G | RefSeq:NP_001322543.1 | RefSeq:NP_174999.1 | TAIR:AT1G43000 |
| UniParc:UPI0007E1A8CC | UniProt:A0A178VZV5 | UniProt:A0A1P8AUB3 | MapMan:15.5.43 | : | : |
Description
PLATZ transcription factor family protein [Source:TAIR;Acc:AT1G43000]
Coordinates
chr1:+:16140526..16141792
Molecular Weight (calculated)
24965.0 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.257
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSIVKMEN DDVMTPPWLT PMLRADYFVT CSIHSQSSKS ECNLFCLDCS GNAFCSSCLA HHRTHRVIQI RRSSYHNVVR VSEIQKHIDI SCIQTYVINS
101: AKIFFLNARP QCRTGKSLNK TCQICSRNLL DSFLFCSLAC KLEGVKNGED PNLTLFHSGK SDDSSKIINT GICSRLIDGI SIAVDDQRSE TAGVLSPETP
201: SIESHRNYPM KSRRKGIPQR APF
101: AKIFFLNARP QCRTGKSLNK TCQICSRNLL DSFLFCSLAC KLEGVKNGED PNLTLFHSGK SDDSSKIINT GICSRLIDGI SIAVDDQRSE TAGVLSPETP
201: SIESHRNYPM KSRRKGIPQR APF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.