Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29486 | Canola | cytosol | 93.09 | 93.85 |
| Bra025865.1-P | Field mustard | cytosol | 93.09 | 93.85 |
| Bra012263.1-P | Field mustard | cytosol | 75.61 | 93.47 |
| CDY04591 | Canola | cytosol | 92.28 | 93.03 |
| CDY01340 | Canola | cytosol | 87.8 | 92.7 |
| CDY00356 | Canola | cytosol | 89.02 | 89.75 |
| AT1G76590.1 | Thale cress | cytosol | 81.3 | 81.63 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 55.28 | 73.91 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 57.72 | 70.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.06 | 65.84 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 60.57 | 65.64 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 56.5 | 57.44 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 56.5 | 57.44 |
| Os06t0624900-01 | Rice | cytosol | 58.13 | 56.52 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 54.88 | 56.49 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 55.28 | 56.2 |
| AT1G43000.2 | Thale cress | cytosol | 50.41 | 55.61 |
| AT1G32700.1 | Thale cress | cytosol | 47.97 | 55.4 |
| OQU76729 | Sorghum | cytosol, plastid | 57.32 | 55.08 |
| AT4G17900.1 | Thale cress | nucleus | 45.94 | 49.78 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 63.01 | 47.11 |
| AT5G46710.1 | Thale cress | nucleus | 38.62 | 42.04 |
| AT2G27930.5 | Thale cress | plastid | 31.71 | 40.62 |
| AT2G12646.1 | Thale cress | nucleus | 30.49 | 29.3 |
| AT1G31040.1 | Thale cress | nucleus | 28.86 | 29.22 |
| AT3G60670.1 | Thale cress | cytosol | 27.64 | 27.76 |
| AT2G01818.1 | Thale cress | nucleus | 23.17 | 25.68 |
Protein Annotations
| MapMan:15.5.43 | EntrezGene:838694 | UniProt:A0A178WJ45 | ProteinID:AEE30052.1 | EMBL:AF375404 | EMBL:AF428392 |
| ArrayExpress:AT1G21000 | EnsemblPlantsGene:AT1G21000 | RefSeq:AT1G21000 | TAIR:AT1G21000 | RefSeq:AT1G21000-TAIR-G | EnsemblPlants:AT1G21000.1 |
| TAIR:AT1G21000.1 | EMBL:AY129471 | InterPro:DUF597 | GO:GO:0008150 | RefSeq:NP_564128.1 | ProteinID:OAP18390.1 |
| PFAM:PF04640 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | UniProt:Q93V70 |
| UniParc:UPI00000A9977 | SEG:seg | : | : | : | : |
Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
Coordinates
chr1:+:7337605..7339452
Molecular Weight (calculated)
27630.0 Da
IEP (calculated)
8.790
GRAVY (calculated)
-0.485
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPMIRTEEE EDYTSPPWLM PMLRGSYFVP CSIHVDSNKN ECNLFCLDCA GNAFCSYCLV KHKDHRVVQI RRSSYHNVVR VNEIQKFIDI ACVQTYIINS
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.