Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29486 | Canola | cytosol | 98.36 | 98.36 |
| CDY01340 | Canola | cytosol | 90.16 | 94.42 |
| CDY33661 | Canola | cytosol | 92.21 | 92.59 |
| AT1G21000.1 | Thale cress | cytosol | 93.03 | 92.28 |
| CDY00356 | Canola | cytosol | 92.21 | 92.21 |
| CDX96610 | Canola | cytosol | 92.21 | 85.23 |
| CDX87583 | Canola | nucleus | 81.15 | 83.19 |
| CDX88300 | Canola | nucleus | 80.74 | 83.12 |
| CDX68093 | Canola | nucleus | 81.15 | 82.85 |
| CDX85958 | Canola | nucleus | 81.56 | 79.6 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 55.74 | 73.91 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 57.38 | 69.31 |
| GSMUA_AchrUn_... | Banana | cytosol | 55.74 | 67.33 |
| PGSC0003DMT400025721 | Potato | plastid | 47.54 | 66.67 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 60.66 | 65.2 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 56.56 | 57.02 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 56.56 | 57.02 |
| Os06t0624900-01 | Rice | cytosol | 58.61 | 56.52 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 54.92 | 56.07 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 55.33 | 55.79 |
| OQU76729 | Sorghum | cytosol, plastid | 57.79 | 55.08 |
| CDY01500 | Canola | nucleus | 46.72 | 53.27 |
| CDX71409 | Canola | nucleus | 40.57 | 52.66 |
| CDX90437 | Canola | nucleus | 45.49 | 51.87 |
| CDY04518 | Canola | nucleus | 40.16 | 51.85 |
| CDX76551 | Canola | nucleus | 46.72 | 50.89 |
| CDY08880 | Canola | nucleus | 46.72 | 50.89 |
| CDX78810 | Canola | nucleus | 47.13 | 50.66 |
| CDY44504 | Canola | nucleus | 47.13 | 50.66 |
| CDY30518 | Canola | cytosol | 38.93 | 49.74 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 63.52 | 47.11 |
| CDY72135 | Canola | cytosol, nucleus | 40.98 | 46.51 |
| CDY35177 | Canola | nucleus | 41.8 | 44.54 |
| CDY03199 | Canola | nucleus | 40.98 | 44.44 |
| CDY66745 | Canola | nucleus | 40.16 | 43.95 |
| CDY69918 | Canola | nucleus | 40.57 | 43.81 |
| CDY69910 | Canola | nucleus | 40.57 | 43.81 |
| CDX87686 | Canola | nucleus | 40.98 | 43.29 |
| CDX87684 | Canola | nucleus | 40.16 | 41.7 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 47.95 | 41.2 |
| CDY06424 | Canola | cytosol | 37.7 | 40.35 |
| CDY44664 | Canola | plasma membrane | 47.95 | 39.8 |
| CDX98234 | Canola | cytosol | 24.59 | 34.88 |
| CDY27171 | Canola | nucleus | 29.51 | 30.0 |
| CDY12444 | Canola | nucleus | 29.1 | 29.58 |
| CDX81439 | Canola | cytosol | 30.74 | 29.3 |
| CDY36264 | Canola | nucleus | 22.95 | 29.17 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 27.46 | 29.13 |
| CDY37203 | Canola | cytosol | 30.33 | 29.02 |
| CDX89067 | Canola | cytosol | 29.1 | 28.63 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 42.62 | 28.57 |
| CDX71792 | Canola | cytosol | 28.28 | 28.4 |
| CDY43172 | Canola | nucleus | 23.36 | 28.36 |
| CDY48369 | Canola | cytosol | 28.69 | 28.11 |
| CDX93111 | Canola | cytosol | 30.33 | 26.71 |
| CDY02353 | Canola | mitochondrion, nucleus | 20.08 | 26.49 |
| CDX89603 | Canola | cytosol | 29.92 | 26.35 |
| CDY09414 | Canola | cytosol | 23.36 | 25.91 |
| CDY17645 | Canola | nucleus | 24.59 | 25.75 |
Protein Annotations
| EnsemblPlants:CDY04591 | EnsemblPlantsGene:GSBRNA2T00119144001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 |
| ProteinID:CDY04591 | ProteinID:CDY04591.1 | UniParc:UPI0004EE2720 | MapMan:15.5.43 | : | : |
Description
BnaC05g16290D
Coordinates
chrLK031956:+:73997..75679
Molecular Weight (calculated)
27554.9 Da
IEP (calculated)
8.904
GRAVY (calculated)
-0.528
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRTEEQEED YMSPPWLMPM LRGSYFVPCL IHADSNKNEC NLFCLDCAGN AFCSYCLVKH KDHRVVQIRR SSYHNVVRVN EIQKYIDISC VQTYIINSAK
101: IVFLNERPQP RIGKGVTNNC EICCRSLLDS FRFCSLGCKL GGMKRGDQSL TFSLRGKHGR EYQGGSESDE ATTPTKLRKT NAFNRLMSGL SISTVRLDYY
201: GPGGDQRSLS SGDEGGFSFS PGTPPIYNHR NSSRRKGIPH RAPF
101: IVFLNERPQP RIGKGVTNNC EICCRSLLDS FRFCSLGCKL GGMKRGDQSL TFSLRGKHGR EYQGGSESDE ATTPTKLRKT NAFNRLMSGL SISTVRLDYY
201: GPGGDQRSLS SGDEGGFSFS PGTPPIYNHR NSSRRKGIPH RAPF
001: MIRTEEEEDY TSPPWLMPML RGSYFVPCSI HVDSNKNECN LFCLDCAGNA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKFIDIACV QTYIINSAKI
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
Arabidopsis Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.