Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35177 | Canola | nucleus | 95.56 | 93.89 |
| Bra017531.1-P | Field mustard | nucleus | 95.11 | 93.45 |
| CDY69918 | Canola | nucleus | 82.67 | 82.3 |
| CDY69910 | Canola | nucleus | 82.22 | 81.86 |
| CDX90437 | Canola | nucleus | 69.33 | 72.9 |
| CDY01500 | Canola | nucleus | 68.89 | 72.43 |
| CDY44504 | Canola | nucleus | 72.44 | 71.81 |
| CDX78810 | Canola | nucleus | 72.44 | 71.81 |
| CDX76551 | Canola | nucleus | 69.78 | 70.09 |
| CDY08880 | Canola | nucleus | 69.78 | 70.09 |
| CDY66745 | Canola | nucleus | 68.0 | 68.61 |
| CDX87686 | Canola | nucleus | 69.78 | 67.97 |
| AT5G46710.1 | Thale cress | nucleus | 64.44 | 64.16 |
| CDY72135 | Canola | cytosol, nucleus | 60.89 | 63.72 |
| CDX87684 | Canola | nucleus | 65.33 | 62.55 |
| KRH39550 | Soybean | nucleus | 64.0 | 61.02 |
| KRH74408 | Soybean | nucleus | 63.56 | 60.59 |
| KRH75604 | Soybean | nucleus | 56.0 | 60.0 |
| PGSC0003DMT400045164 | Potato | nucleus | 57.78 | 57.27 |
| Solyc08g076860.2.1 | Tomato | nucleus | 57.78 | 57.02 |
| PGSC0003DMT400046007 | Potato | cytosol | 56.44 | 56.7 |
| PGSC0003DMT400019836 | Potato | nucleus | 55.56 | 56.05 |
| Solyc08g005100.2.1 | Tomato | cytosol | 55.56 | 55.8 |
| Solyc06g061240.2.1 | Tomato | nucleus | 55.11 | 55.36 |
| Os04t0591100-01 | Rice | nucleus | 58.22 | 52.61 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 57.78 | 52.42 |
| KXG30975 | Sorghum | nucleus | 58.67 | 52.38 |
| EES12755 | Sorghum | nucleus | 58.22 | 52.19 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 56.89 | 52.03 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 56.89 | 52.03 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 57.33 | 51.81 |
| Os02t0692700-01 | Rice | nucleus | 59.11 | 51.75 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 56.44 | 51.63 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 59.56 | 51.15 |
| Zm00001d026047_P002 | Maize | nucleus | 57.33 | 50.99 |
| Zm00001d002489_P001 | Maize | nucleus | 57.78 | 50.78 |
| Zm00001d051511_P001 | Maize | nucleus | 56.44 | 50.6 |
| Zm00001d017682_P001 | Maize | nucleus | 56.44 | 50.4 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 59.56 | 47.18 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 57.33 | 46.91 |
| CDY44664 | Canola | plasma membrane | 59.56 | 45.58 |
| CDX71409 | Canola | nucleus | 36.44 | 43.62 |
| CDY30518 | Canola | cytosol | 36.89 | 43.46 |
| CDY01340 | Canola | cytosol | 44.44 | 42.92 |
| CDY04518 | Canola | nucleus | 36.0 | 42.86 |
| CDX88300 | Canola | nucleus | 44.89 | 42.62 |
| CDX87583 | Canola | nucleus | 44.89 | 42.44 |
| CDX68093 | Canola | nucleus | 44.44 | 41.84 |
| CDY04591 | Canola | cytosol | 44.44 | 40.98 |
| CDY33661 | Canola | cytosol | 44.0 | 40.74 |
| CDY29486 | Canola | cytosol | 44.0 | 40.57 |
| CDY00356 | Canola | cytosol | 44.0 | 40.57 |
| CDX85958 | Canola | nucleus | 44.0 | 39.6 |
| CDX96610 | Canola | cytosol | 43.11 | 36.74 |
| CDX98234 | Canola | cytosol | 28.0 | 36.63 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 49.33 | 34.58 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 52.0 | 32.14 |
| CDY37203 | Canola | cytosol | 36.0 | 31.76 |
| CDY12444 | Canola | nucleus | 33.78 | 31.67 |
| CDY27171 | Canola | nucleus | 33.78 | 31.67 |
| CDX81439 | Canola | cytosol | 36.0 | 31.64 |
| CDY36264 | Canola | nucleus | 26.67 | 31.25 |
| CDY06424 | Canola | cytosol | 31.11 | 30.7 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 30.67 | 30.0 |
| CDX89067 | Canola | cytosol | 32.44 | 29.44 |
| CDY48369 | Canola | cytosol | 32.44 | 29.32 |
| CDY17645 | Canola | nucleus | 30.22 | 29.18 |
| CDX93111 | Canola | cytosol | 35.56 | 28.88 |
| CDX71792 | Canola | cytosol | 31.11 | 28.81 |
| CDX89603 | Canola | cytosol | 35.11 | 28.52 |
| CDY43172 | Canola | nucleus | 24.89 | 27.86 |
| CDY09414 | Canola | cytosol | 27.11 | 27.73 |
| CDY02353 | Canola | mitochondrion, nucleus | 22.22 | 27.03 |
Protein Annotations
| EnsemblPlants:CDY03199 | EnsemblPlantsGene:GSBRNA2T00115691001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| ProteinID:CDY03199 | ProteinID:CDY03199.1 | SEG:seg | UniParc:UPI0004EE6251 | MapMan:15.5.43 | : |
Description
BnaC09g19570D
Coordinates
chrLK031941:+:643440..644753
Molecular Weight (calculated)
25419.4 Da
IEP (calculated)
8.807
GRAVY (calculated)
-0.562
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDHENPN RVINPKNRTI MGGGGEEKWW PSWLKPLLKE PFFVQCNFHG HSPKSECNMY CLDCTNGSLC SLCLAHHKDH RTIQIRRSSY HDVIRVSEIQ
101: KHLDIFSIQT YVINSAKVVF LNERPQPQPR PAKGVTNACT VCYRALVDDC FRFCSLGCKV AGTSRSFEKR VKNTAMESDN SSNSSGVEDL IPNPQCLTPS
201: TPQLPSSTSL RKRPRKGIPY QSPLQ
101: KHLDIFSIQT YVINSAKVVF LNERPQPQPR PAKGVTNACT VCYRALVDDC FRFCSLGCKV AGTSRSFEKR VKNTAMESDN SSNSSGVEDL IPNPQCLTPS
201: TPQLPSSTSL RKRPRKGIPY QSPLQ
001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
Arabidopsis Description
At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.