Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g061240.2.1 | Tomato | nucleus | 97.31 | 96.88 |
| KRH75604 | Soybean | nucleus | 74.44 | 79.05 |
| PGSC0003DMT400045164 | Potato | nucleus | 78.48 | 77.09 |
| PGSC0003DMT400046007 | Potato | cytosol | 76.68 | 76.34 |
| KRH74408 | Soybean | nucleus | 76.23 | 72.03 |
| KRH39550 | Soybean | nucleus | 75.78 | 71.61 |
| AT1G32700.1 | Thale cress | cytosol | 66.82 | 69.95 |
| Bra035494.1-P | Field mustard | nucleus | 68.16 | 69.41 |
| CDY01500 | Canola | nucleus | 63.68 | 66.36 |
| CDX90437 | Canola | nucleus | 62.78 | 65.42 |
| Bra012632.1-P | Field mustard | nucleus | 62.78 | 65.42 |
| CDX78810 | Canola | nucleus | 66.37 | 65.2 |
| AT4G17900.1 | Thale cress | nucleus | 65.92 | 64.76 |
| CDY44504 | Canola | nucleus | 65.92 | 64.76 |
| Bra013266.1-P | Field mustard | nucleus | 65.47 | 64.32 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 74.89 | 63.74 |
| CDX76551 | Canola | nucleus | 63.68 | 63.39 |
| Bra021029.1-P | Field mustard | nucleus | 63.68 | 63.39 |
| CDY08880 | Canola | nucleus | 63.23 | 62.95 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 67.26 | 60.24 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 66.82 | 60.08 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 65.47 | 59.35 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 65.47 | 59.35 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 65.02 | 58.94 |
| Os02t0692700-01 | Rice | nucleus | 67.71 | 58.75 |
| KXG30975 | Sorghum | nucleus | 66.37 | 58.73 |
| Os04t0591100-01 | Rice | nucleus | 65.47 | 58.63 |
| EES12755 | Sorghum | nucleus | 65.92 | 58.57 |
| Zm00001d026047_P002 | Maize | nucleus | 65.92 | 58.1 |
| Zm00001d002489_P001 | Maize | nucleus | 65.47 | 57.03 |
| Zm00001d051511_P001 | Maize | nucleus | 64.13 | 56.97 |
| Zm00001d017682_P001 | Maize | nucleus | 64.13 | 56.75 |
| CDY69918 | Canola | nucleus | 56.5 | 55.75 |
| Bra025003.1-P | Field mustard | nucleus | 56.5 | 55.75 |
| CDY69910 | Canola | nucleus | 56.5 | 55.75 |
| CDY03199 | Canola | nucleus | 56.05 | 55.56 |
| CDY35177 | Canola | nucleus | 56.5 | 55.02 |
| Bra017531.1-P | Field mustard | nucleus | 56.05 | 54.59 |
| CDY72135 | Canola | cytosol, nucleus | 52.02 | 53.95 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 68.61 | 53.87 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 66.37 | 53.82 |
| CDY66745 | Canola | nucleus | 53.81 | 53.81 |
| Bra022055.1-P | Field mustard | nucleus | 53.81 | 53.81 |
| Bra023280.1-P | Field mustard | mitochondrion | 68.16 | 53.71 |
| PGSC0003DMT400025721 | Potato | plastid | 41.7 | 53.45 |
| CDX87686 | Canola | nucleus | 53.81 | 51.95 |
| PGSC0003DMT400022166 | Potato | extracellular | 47.53 | 51.71 |
| CDY44664 | Canola | plasma membrane | 68.16 | 51.7 |
| Bra022058.1-P | Field mustard | nucleus | 52.47 | 51.09 |
| CDX87684 | Canola | nucleus | 52.47 | 49.79 |
| AT5G46710.1 | Thale cress | nucleus | 49.78 | 49.12 |
| PGSC0003DMT400090715 | Potato | cytosol | 19.28 | 39.81 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 53.81 | 37.38 |
| PGSC0003DMT400097455 | Potato | cytosol | 17.94 | 37.04 |
| PGSC0003DMT400089328 | Potato | vacuole | 25.56 | 35.85 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 56.05 | 34.34 |
| PGSC0003DMT400075780 | Potato | nucleus | 29.6 | 32.35 |
| PGSC0003DMT400020401 | Potato | cytosol | 34.08 | 30.89 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400019836 | EnsemblPlantsGene:PGSC0003DMG400007670 | EntrezGene:102590765 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:DUF597 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 | PGSC:PGSC0003DMG400007670 | RefSeq:XP_006367446.1 | SEG:seg |
| UniParc:UPI0002952FCF | UniProt:M1ACN2 | MapMan:15.5.43 | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400007670]
Coordinates
chr6:+:44948270..44949875
Molecular Weight (calculated)
25284.2 Da
IEP (calculated)
9.830
GRAVY (calculated)
-0.694
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPDEEDNRW PPWLKPLLKE QFFVQCKLHA DSHKSECNMY CLQCNNAPLC SVCLAHHRDH PVIQIRRSSY HDVIRVNEIQ KYLDISSVQT YIINSAKVVF
101: LNERPQPRPG KGVTNTCEVC ERSLLDSFKF CSLGCKIVGT SSNFVKKKKK PKNSPEKKRL PAPMAASESD DFYSSSSSSH GRRNKIQSFT PSTPPPTSAN
201: YKTAKRRKGI PHRAPTGGLF IEY
101: LNERPQPRPG KGVTNTCEVC ERSLLDSFKF CSLGCKIVGT SSNFVKKKKK PKNSPEKKRL PAPMAASESD DFYSSSSSSH GRRNKIQSFT PSTPPPTSAN
201: YKTAKRRKGI PHRAPTGGLF IEY
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.