Factsheet for Bra021029.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76551	Canola	nucleus	99.55	99.55
CDY08880	Canola	nucleus	98.66	98.66
Bra012632.1-P	Field mustard	nucleus	87.5	91.59
AT4G17900.1	Thale cress	nucleus	90.62	89.43
Bra013266.1-P	Field mustard	nucleus	88.84	87.67
Bra025003.1-P	Field mustard	nucleus	70.98	70.35
KRH39550	Soybean	nucleus	73.66	69.92
KRH75604	Soybean	nucleus	65.18	69.52
KRH74408	Soybean	nucleus	73.21	69.49
Bra017531.1-P	Field mustard	nucleus	70.54	69.0
Bra035494.1-P	Field mustard	nucleus	66.07	67.58
PGSC0003DMT400045164	Potato	nucleus	65.62	64.76
Solyc08g076860.2.1	Tomato	nucleus	65.62	64.47
PGSC0003DMT400019836	Potato	nucleus	63.39	63.68
PGSC0003DMT400046007	Potato	cytosol	63.39	63.39
Solyc06g061240.2.1	Tomato	nucleus	62.95	62.95
Bra022055.1-P	Field mustard	nucleus	62.05	62.33
Solyc08g005100.2.1	Tomato	cytosol	62.05	62.05
VIT_02s0012g01400.t01	Wine grape	nucleus	70.09	59.92
Bra022058.1-P	Field mustard	nucleus	60.71	59.39
TraesCS2D01G447400.1	Wheat	cytosol	62.95	57.32
TraesCS6B01G291400.1	Wheat	nucleus	63.39	57.26
TraesCS2A01G448300.1	Wheat	cytosol	62.5	56.91
TraesCS2B01G469000.1	Wheat	cytosol	62.5	56.91
TraesCS6D01G250500.1	Wheat	nucleus	62.95	56.63
KXG30975	Sorghum	nucleus	62.95	55.95
Os04t0591100-01	Rice	nucleus	62.05	55.82
EES12755	Sorghum	nucleus	62.5	55.78
Os02t0692700-01	Rice	nucleus	63.84	55.64
Bra003715.1-P	Field mustard	nucleus	40.62	55.15
Zm00001d002489_P001	Maize	nucleus	62.5	54.69
Zm00001d026047_P002	Maize	nucleus	61.61	54.55
Bra023280.1-P	Field mustard	mitochondrion	68.75	54.42
Zm00001d017682_P001	Maize	nucleus	61.16	54.37
Zm00001d051511_P001	Maize	nucleus	60.27	53.78
TraesCS6A01G264400.2	Wheat	nucleus	62.95	51.27
Bra012263.1-P	Field mustard	cytosol	43.3	48.74
Bra015731.1-P	Field mustard	nucleus	51.34	48.32
Bra016441.1-P	Field mustard	cytosol	51.34	47.33
Bra025865.1-P	Field mustard	cytosol	50.89	46.72
Bra034379.1-P	Field mustard	nucleus	39.29	46.07
Bra011992.1-P	Field mustard	nucleus	36.61	43.39
HORVU6Hr1G067060.3	Barley	nucleus, plastid	51.79	36.14
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	33.48	31.25
Bra037203.1-P	Field mustard	cytosol	35.27	30.98
Bra014478.1-P	Field mustard	cytosol	33.93	30.65
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	31.25	30.43
Bra014899.1-P	Field mustard	nucleus	33.04	30.08
Bra013149.1-P	Field mustard	cytosol	34.82	28.16
Bra023155.1-P	Field mustard	nucleus	24.55	16.92

Protein Annotations

EnsemblPlants:Bra021029.1	EnsemblPlants:Bra021029.1-P	EnsemblPlantsGene:Bra021029	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF8
PFAM:PF04640	SEG:seg	UniParc:UPI000254727C	UniProt:M4DWY3	MapMan:15.5.43	:

Description

AT4G17900 (E=1e-115) | zinc-binding family protein

Coordinates

chrA08:+:10389749..10391141

Molecular Weight (calculated)

25229.3 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.627

Length

224 amino acids

Sequence
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEED NRQPPWLKPL LQEKFFGHCK FHVDSHKSEC NMYCLDCTNG PLCSLCLAHH KNHHTIQIRR SSYHDVIRVN
101: EIQKHIDISG IQTYVINSAK VIFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGASRGFEK GRKNLVMESD DSSSSIGIGK NIQSFSPSTP
201: PLTASSHCRI AKRRKGIPHR SPMG

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.