Factsheet for Solyc06g061240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019836	Potato	nucleus	96.88	97.31
KRH75604	Soybean	nucleus	74.55	79.52
Solyc08g076860.2.1	Tomato	nucleus	78.12	76.75
Solyc08g005100.2.1	Tomato	cytosol	74.11	74.11
KRH74408	Soybean	nucleus	76.34	72.46
KRH39550	Soybean	nucleus	75.45	71.61
AT1G32700.1	Thale cress	cytosol	66.07	69.48
Bra035494.1-P	Field mustard	nucleus	67.41	68.95
CDY01500	Canola	nucleus	63.39	66.36
Bra012632.1-P	Field mustard	nucleus	62.5	65.42
CDX90437	Canola	nucleus	62.5	65.42
AT4G17900.1	Thale cress	nucleus	65.18	64.32
CDX78810	Canola	nucleus	65.18	64.32
CDY44504	Canola	nucleus	64.73	63.88
VIT_02s0012g01400.t01	Wine grape	nucleus	74.55	63.74
Bra013266.1-P	Field mustard	nucleus	64.29	63.44
CDX76551	Canola	nucleus	62.95	62.95
Bra021029.1-P	Field mustard	nucleus	62.95	62.95
CDY08880	Canola	nucleus	62.5	62.5
TraesCS6D01G250500.1	Wheat	nucleus	67.41	60.64
TraesCS6B01G291400.1	Wheat	nucleus	66.96	60.48
TraesCS2A01G448300.1	Wheat	cytosol	65.62	59.76
TraesCS2D01G447400.1	Wheat	cytosol	65.62	59.76
EES12755	Sorghum	nucleus	66.52	59.36
TraesCS2B01G469000.1	Wheat	cytosol	65.18	59.35
Os02t0692700-01	Rice	nucleus	67.86	59.14
KXG30975	Sorghum	nucleus	66.52	59.13
Os04t0591100-01	Rice	nucleus	65.62	59.04
Zm00001d026047_P002	Maize	nucleus	66.52	58.89
Zm00001d002489_P001	Maize	nucleus	65.62	57.42
Zm00001d017682_P001	Maize	nucleus	64.29	57.14
Zm00001d051511_P001	Maize	nucleus	63.84	56.97
CDY69918	Canola	nucleus	56.25	55.75
CDY69910	Canola	nucleus	56.25	55.75
Bra025003.1-P	Field mustard	nucleus	56.25	55.75
CDY03199	Canola	nucleus	55.36	55.11
CDY35177	Canola	nucleus	55.8	54.59
TraesCS6A01G264400.2	Wheat	nucleus	66.52	54.18
Bra017531.1-P	Field mustard	nucleus	55.36	54.15
CDX84082	Canola	cytosol, endoplasmic reticulum, vacuole	67.86	53.52
CDY72135	Canola	cytosol, nucleus	51.34	53.49
Bra022055.1-P	Field mustard	nucleus	53.12	53.36
CDY66745	Canola	nucleus	53.12	53.36
Bra023280.1-P	Field mustard	mitochondrion	67.41	53.36
Solyc10g085800.1.1	Tomato	extracellular	47.32	51.71
CDX87686	Canola	nucleus	53.12	51.52
CDY44664	Canola	plasma membrane	67.41	51.36
Bra022058.1-P	Field mustard	nucleus	51.79	50.66
CDX87684	Canola	nucleus	52.23	49.79
AT5G46710.1	Thale cress	nucleus	49.55	49.12
Solyc07g049120.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.79	37.74
Solyc07g049130.1.1	Tomato	nucleus	26.79	37.74
HORVU6Hr1G067060.3	Barley	nucleus, plastid	53.12	37.07
CDY01253	Canola	cytosol, endoplasmic reticulum, golgi, plastid	55.36	34.07
Solyc01g091000.2.1	Tomato	cytosol, nucleus, plasma membrane	36.61	32.8
Solyc02g033100.1.1	Tomato	nucleus	26.34	32.6
Solyc02g068510.1.1	Tomato	cytosol	34.82	32.37
Solyc02g036230.1.1	Tomato	nucleus	25.0	30.94
Solyc12g010470.1.1	Tomato	cytosol	33.93	30.89
Solyc04g008090.2.1	Tomato	cytosol	29.02	30.52
Solyc07g007320.1.1	Tomato	cytosol	34.38	30.2
Solyc02g033110.1.1	Tomato	nucleus	20.98	29.38
Solyc02g036170.1.1	Tomato	nucleus	21.43	28.4
Solyc02g036140.1.1	Tomato	nucleus	21.43	28.4
Solyc02g033120.1.1	Tomato	nucleus	20.09	28.12
Solyc02g036200.1.1	Tomato	nucleus	21.43	26.82
Solyc02g036130.1.1	Tomato	cytosol	15.62	25.55
Solyc02g036120.1.1	Tomato	peroxisome	16.96	23.46

Protein Annotations

EnsemblPlants:Solyc06g061240.2.1	EnsemblPlantsGene:Solyc06g061240.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	InterPro:DUF597	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31065
PANTHER:PTHR31065:SF8	PFAM:PF04640	SEG:seg	UniParc:UPI0002766750	UniProt:K4C6V4	MapMan:15.5.43

Description

No Description!

Coordinates

chr6:+:39246666..39248042

Molecular Weight (calculated)

25339.3 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.651

Length

224 amino acids

Sequence
(BLAST)

001: MGPDEDDNRW PPWLKPLLKE RFFVQCKLHA DSHKSECNMY CLQCNNAPLC SVCLAHHRDH PVIQIRRSSY HDVIRVNEIQ KYLDISSVQT YIINSAKVVF
101: LNERPQPRPG KGVTNTCEVC ERSLLDSFKF CSLGCKIVGT SSNFVKKKKK PKNSPEKKRL PAAVVAASEF DDSYSSSSSS HGRRNKIQSF TPSTPPPTSA
201: NYKTAKRRKG IPHRAPTGGL FIEY

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.