Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01500 | Canola | nucleus | 88.99 | 94.39 |
| CDX90437 | Canola | nucleus | 87.67 | 92.99 |
| Bra012632.1-P | Field mustard | nucleus | 87.22 | 92.52 |
| CDX78810 | Canola | nucleus | 92.07 | 92.07 |
| CDY44504 | Canola | nucleus | 90.75 | 90.75 |
| Bra013266.1-P | Field mustard | nucleus | 90.75 | 90.75 |
| Bra021029.1-P | Field mustard | nucleus | 89.43 | 90.62 |
| CDY08880 | Canola | nucleus | 88.99 | 90.18 |
| CDX76551 | Canola | nucleus | 88.99 | 90.18 |
| KRH39550 | Soybean | nucleus | 75.77 | 72.88 |
| KRH75604 | Soybean | nucleus | 67.4 | 72.86 |
| KRH74408 | Soybean | nucleus | 75.33 | 72.46 |
| AT1G32700.1 | Thale cress | cytosol | 64.32 | 68.54 |
| PGSC0003DMT400045164 | Potato | nucleus | 67.84 | 67.84 |
| Solyc08g076860.2.1 | Tomato | nucleus | 67.4 | 67.11 |
| PGSC0003DMT400046007 | Potato | cytosol | 65.2 | 66.07 |
| PGSC0003DMT400019836 | Potato | nucleus | 64.76 | 65.92 |
| Solyc06g061240.2.1 | Tomato | nucleus | 64.32 | 65.18 |
| Solyc08g005100.2.1 | Tomato | cytosol | 63.0 | 63.84 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 72.25 | 62.6 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 65.2 | 59.68 |
| AT5G46710.1 | Thale cress | nucleus | 59.03 | 59.29 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 64.32 | 58.63 |
| KXG30975 | Sorghum | nucleus | 64.76 | 58.33 |
| Os02t0692700-01 | Rice | nucleus | 65.64 | 57.98 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 62.56 | 57.72 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 62.56 | 57.72 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 62.11 | 57.32 |
| Os04t0591100-01 | Rice | nucleus | 62.56 | 57.03 |
| EES12755 | Sorghum | nucleus | 62.56 | 56.57 |
| Zm00001d017682_P001 | Maize | nucleus | 62.11 | 55.95 |
| Zm00001d002489_P001 | Maize | nucleus | 62.56 | 55.47 |
| Zm00001d051511_P001 | Maize | nucleus | 61.23 | 55.38 |
| Zm00001d026047_P002 | Maize | nucleus | 61.23 | 54.94 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 64.76 | 53.45 |
| AT1G21000.1 | Thale cress | cytosol | 49.78 | 45.94 |
| AT1G43000.2 | Thale cress | cytosol | 44.05 | 44.84 |
| AT1G76590.1 | Thale cress | cytosol | 48.02 | 44.49 |
| AT2G27930.5 | Thale cress | plastid | 33.48 | 39.58 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 52.86 | 37.38 |
| AT3G60670.1 | Thale cress | cytosol | 33.48 | 31.02 |
| AT2G12646.1 | Thale cress | nucleus | 33.92 | 30.08 |
| AT2G01818.1 | Thale cress | nucleus | 29.07 | 29.73 |
| AT1G31040.1 | Thale cress | nucleus | 31.72 | 29.63 |
Protein Annotations
| MapMan:15.5.43 | EntrezGene:827514 | UniProt:A0A178UTA3 | ProteinID:AEE83964.1 | EMBL:AK227244 | ArrayExpress:AT4G17900 |
| EnsemblPlantsGene:AT4G17900 | RefSeq:AT4G17900 | TAIR:AT4G17900 | RefSeq:AT4G17900-TAIR-G | EnsemblPlants:AT4G17900.1 | TAIR:AT4G17900.1 |
| EMBL:BT029385 | InterPro:DUF597 | GO:GO:0008150 | RefSeq:NP_193524.2 | ProteinID:OAO97088.1 | PFAM:PF04640 |
| PO:PO:0000293 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | UniProt:Q0WUB8 | UniParc:UPI000034F0AE | SEG:seg |
Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
Coordinates
chr4:+:9945778..9948157
Molecular Weight (calculated)
25753.9 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.611
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.