Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90437 | Canola | nucleus | 98.6 | 98.6 |
| CDX78810 | Canola | nucleus | 95.79 | 90.31 |
| AT4G17900.1 | Thale cress | nucleus | 94.39 | 88.99 |
| CDY44504 | Canola | nucleus | 93.93 | 88.55 |
| CDX76551 | Canola | nucleus | 92.06 | 87.95 |
| CDY08880 | Canola | nucleus | 91.59 | 87.5 |
| CDY69918 | Canola | nucleus | 75.23 | 71.24 |
| KRH75604 | Soybean | nucleus | 69.16 | 70.48 |
| CDY69910 | Canola | nucleus | 74.3 | 70.35 |
| KRH39550 | Soybean | nucleus | 77.1 | 69.92 |
| KRH74408 | Soybean | nucleus | 76.64 | 69.49 |
| CDY35177 | Canola | nucleus | 73.83 | 69.0 |
| CDY03199 | Canola | nucleus | 72.43 | 68.89 |
| Solyc08g076860.2.1 | Tomato | nucleus | 70.56 | 66.23 |
| PGSC0003DMT400045164 | Potato | nucleus | 70.09 | 66.08 |
| PGSC0003DMT400046007 | Potato | cytosol | 67.29 | 64.29 |
| PGSC0003DMT400019836 | Potato | nucleus | 66.36 | 63.68 |
| Solyc06g061240.2.1 | Tomato | nucleus | 66.36 | 63.39 |
| CDY66745 | Canola | nucleus | 65.89 | 63.23 |
| Solyc08g005100.2.1 | Tomato | cytosol | 65.89 | 62.95 |
| CDX87686 | Canola | nucleus | 67.76 | 62.77 |
| CDX87684 | Canola | nucleus | 66.36 | 60.43 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 73.83 | 60.31 |
| CDY72135 | Canola | cytosol, nucleus | 60.28 | 60.0 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 66.82 | 57.66 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 66.82 | 57.43 |
| Os02t0692700-01 | Rice | nucleus | 67.76 | 56.42 |
| KXG30975 | Sorghum | nucleus | 66.36 | 56.35 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 64.02 | 55.69 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 63.55 | 55.28 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 63.55 | 55.28 |
| Zm00001d017682_P001 | Maize | nucleus | 64.49 | 54.76 |
| Os04t0591100-01 | Rice | nucleus | 63.55 | 54.62 |
| EES12755 | Sorghum | nucleus | 64.02 | 54.58 |
| Zm00001d051511_P001 | Maize | nucleus | 63.55 | 54.18 |
| Zm00001d002489_P001 | Maize | nucleus | 64.49 | 53.91 |
| Zm00001d026047_P002 | Maize | nucleus | 63.55 | 53.75 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 69.63 | 52.46 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 66.36 | 51.64 |
| CDY44664 | Canola | plasma membrane | 69.63 | 50.68 |
| CDY01340 | Canola | cytosol | 52.8 | 48.5 |
| CDY33661 | Canola | cytosol | 53.74 | 47.33 |
| CDX88300 | Canola | nucleus | 52.34 | 47.26 |
| CDX87583 | Canola | nucleus | 52.34 | 47.06 |
| CDX68093 | Canola | nucleus | 52.34 | 46.86 |
| CDY04591 | Canola | cytosol | 53.27 | 46.72 |
| CDY29486 | Canola | cytosol | 53.27 | 46.72 |
| CDY00356 | Canola | cytosol | 52.8 | 46.31 |
| CDY30518 | Canola | cytosol | 40.65 | 45.55 |
| CDX71409 | Canola | nucleus | 39.72 | 45.21 |
| CDY04518 | Canola | nucleus | 38.78 | 43.92 |
| CDX85958 | Canola | nucleus | 50.47 | 43.2 |
| CDX96610 | Canola | cytosol | 53.27 | 43.18 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 55.14 | 36.76 |
| CDX98234 | Canola | cytosol | 28.97 | 36.05 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 61.22 | 35.99 |
| CDY06424 | Canola | cytosol | 35.51 | 33.33 |
| CDY36264 | Canola | nucleus | 28.5 | 31.77 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 34.11 | 31.74 |
| CDX81439 | Canola | cytosol | 37.85 | 31.64 |
| CDX89067 | Canola | cytosol | 36.45 | 31.45 |
| CDY37203 | Canola | cytosol | 36.92 | 30.98 |
| CDY48369 | Canola | cytosol | 35.98 | 30.92 |
| CDY12444 | Canola | nucleus | 34.11 | 30.42 |
| CDY27171 | Canola | nucleus | 34.11 | 30.42 |
| CDX71792 | Canola | cytosol | 34.11 | 30.04 |
| CDY09414 | Canola | cytosol | 30.37 | 29.55 |
| CDX89603 | Canola | cytosol | 36.92 | 28.52 |
| CDY17645 | Canola | nucleus | 30.84 | 28.33 |
| CDX93111 | Canola | cytosol | 36.45 | 28.16 |
| CDY43172 | Canola | nucleus | 25.7 | 27.36 |
| CDY02353 | Canola | mitochondrion, nucleus | 22.9 | 26.49 |
Protein Annotations
| EnsemblPlants:CDY01500 | EnsemblPlantsGene:GSBRNA2T00112516001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| ProteinID:CDY01500 | ProteinID:CDY01500.1 | SEG:seg | UniParc:UPI0004EE8962 | MapMan:15.5.43 | : |
Description
BnaC07g34900D
Coordinates
chrLK031927:+:188718..190706
Molecular Weight (calculated)
24356.2 Da
IEP (calculated)
9.215
GRAVY (calculated)
-0.643
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDQENTI REFKPKNRRI MGAGGPEEED NRWPPWLKPL LKEHFFAHCK FHVDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDISG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGSSRGFEK GRKNLLMETE DSGSFSPSTP PLTASSSCRI
201: AKRRKGIPHR SPMG
101: EIQKYLDISG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGSSRGFEK GRKNLLMETE DSGSFSPSTP PLTASSSCRI
201: AKRRKGIPHR SPMG
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.