Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88300 | Canola | nucleus | 42.54 | 40.93 |
| CDX87583 | Canola | nucleus | 42.54 | 40.76 |
| CDX68093 | Canola | nucleus | 42.54 | 40.59 |
| CDY01340 | Canola | cytosol | 40.35 | 39.48 |
| CDX85958 | Canola | nucleus | 42.54 | 38.8 |
| CDY33661 | Canola | cytosol | 40.79 | 38.27 |
| CDY04591 | Canola | cytosol | 40.35 | 37.7 |
| CDY29486 | Canola | cytosol | 40.35 | 37.7 |
| CDY00356 | Canola | cytosol | 39.91 | 37.3 |
| AT1G76590.1 | Thale cress | cytosol | 39.91 | 37.14 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 31.58 | 35.64 |
| CDX96610 | Canola | cytosol | 41.23 | 35.61 |
| CDY01500 | Canola | nucleus | 33.33 | 35.51 |
| CDX90437 | Canola | nucleus | 32.89 | 35.05 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 34.65 | 34.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.7 | 34.65 |
| CDX78810 | Canola | nucleus | 34.21 | 34.36 |
| CDY44504 | Canola | nucleus | 33.77 | 33.92 |
| CDY72135 | Canola | cytosol, nucleus | 31.58 | 33.49 |
| CDX76551 | Canola | nucleus | 32.46 | 33.04 |
| CDY08880 | Canola | nucleus | 32.46 | 33.04 |
| CDX71409 | Canola | nucleus | 27.19 | 32.98 |
| CDY04518 | Canola | nucleus | 27.19 | 32.8 |
| CDY35177 | Canola | nucleus | 31.58 | 31.44 |
| CDY69918 | Canola | nucleus | 31.14 | 31.42 |
| CDY69910 | Canola | nucleus | 31.14 | 31.42 |
| CDY03199 | Canola | nucleus | 30.7 | 31.11 |
| PGSC0003DMT400025721 | Potato | plastid | 23.68 | 31.03 |
| CDY30518 | Canola | cytosol | 25.88 | 30.89 |
| CDY66745 | Canola | nucleus | 29.82 | 30.49 |
| CDX87686 | Canola | nucleus | 30.7 | 30.3 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 32.02 | 30.17 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 24.12 | 29.89 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 31.58 | 29.75 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 31.58 | 29.75 |
| CDX87684 | Canola | nucleus | 30.26 | 29.36 |
| Os06t0624900-01 | Rice | cytosol | 31.14 | 28.06 |
| OQU76729 | Sorghum | cytosol, plastid | 31.14 | 27.73 |
| CDX98234 | Canola | cytosol | 20.61 | 27.33 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 28.51 | 27.2 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 32.89 | 26.41 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 37.72 | 26.14 |
| CDY44664 | Canola | plasma membrane | 32.89 | 25.51 |
| CDY27171 | Canola | nucleus | 23.25 | 22.08 |
| CDY12444 | Canola | nucleus | 22.81 | 21.67 |
| CDY36264 | Canola | nucleus | 17.98 | 21.35 |
| CDX81439 | Canola | cytosol | 23.68 | 21.09 |
| CDY37203 | Canola | cytosol | 23.25 | 20.78 |
| CDX89067 | Canola | cytosol | 22.37 | 20.56 |
| CDY48369 | Canola | cytosol | 22.37 | 20.48 |
| CDY09414 | Canola | cytosol | 19.74 | 20.45 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 20.18 | 20.0 |
| CDX71792 | Canola | cytosol | 20.61 | 19.34 |
| CDY17645 | Canola | nucleus | 19.74 | 19.31 |
| CDX93111 | Canola | cytosol | 23.25 | 19.13 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 30.26 | 18.96 |
| CDX89603 | Canola | cytosol | 22.81 | 18.77 |
| CDY43172 | Canola | nucleus | 15.79 | 17.91 |
| CDY02353 | Canola | mitochondrion, nucleus | 13.16 | 16.22 |
Protein Annotations
| EnsemblPlants:CDY06424 | EnsemblPlantsGene:GSBRNA2T00122427001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 |
| ProteinID:CDY06424 | ProteinID:CDY06424.1 | UniParc:UPI0004EB6E74 | MapMan:15.5.43 | : | : |
Description
BnaC05g31060D
Coordinates
chrLK031969:-:703302..704374
Molecular Weight (calculated)
26261.3 Da
IEP (calculated)
8.774
GRAVY (calculated)
-0.629
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRVEEDYYL SSPWLIPMPR GNYFVPCSIH ADSNKSECNM FCLDCTSNTF CSYCLVNHKN HRVLQIRRSS YHNVMRVNEI QKYLDISCVQ TYNQQRKDRV
101: LERTSSAKNR QRHYYFTKLT MLPLFGDVAW KNQSLTFSLK GKHGRECQGG SESDEMTTPT KIRKTCPFNR LMNGLFISTV KSDYFSGDQQ STNSGDESCF
201: NLSPGIITEL KQTEGCTSPC SVLKLTKK
101: LERTSSAKNR QRHYYFTKLT MLPLFGDVAW KNQSLTFSLK GKHGRECQGG SESDEMTTPT KIRKTCPFNR LMNGLFISTV KSDYFSGDQQ STNSGDESCF
201: NLSPGIITEL KQTEGCTSPC SVLKLTKK
001: MGPMIRTEEE EDYTSPPWLM PMLRGSYFVP CSIHVDSNKN ECNLFCLDCA GNAFCSYCLV KHKDHRVVQI RRSSYHNVVR VNEIQKFIDI ACVQTYIINS
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
Arabidopsis Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.